Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181269g00048 ATGGCCGCCAACAACAACAACAATCCGCATGATCATGATCCTGATCATCAACTCTCCACTGCTCTTAGGCTTCTCGTCGTTGATCATGATCCTGCAAACTTAAATCTTATTCAAGATTTGGCTTTTCAATGCAACTATCGAGTGACCACATGCTGCGAGGGTTCTGAGGCTTTGAATCTTCTGCGGGAGAAAAGAGAGTGCTTCGATGTGGTGCTATGTGATGTTCATATGCCAGGGATGGTTGATGGCTCTCCCTTGTTTGATCATGTTCTCCAAGAATTCAATATTCCTGTCGTAGTGACGTGTTCAATGGATGATGCGTCATCATCAAGTACAGTGATGGAGAGCATGAAGAAACAAAAAGGGGCTTGTTATAATTTAGTTAAACCTATTACCGAGGAAGGTTTGAGTAATATATTGCAGAGTGTGAGCATTGAGAAAACCCGGAAAAAAGATTATTGCGATGATGTTGAAAGCGAAGAAACAATGAATAAAAAGAAGAGGAGGAGCTTATCAATAGAAGAAAGAGATGATCATCATGATCTGCAGCATCAGCAGCAGCAGCCCAACACTCCCAATAAGAAGCCACGTTTTGTTTGGACAAATGAAAGGCATCAGAAGTTCGTAGATGCTGTATTCCATCTAGGGATTGACAAAGCTGTGCCAAAGAAAATTATGGAATTGATGGATATGCCTCAATTGACAAGAGAAAATGTTGCCAGCCATCTCCAGAAATTCAGGATTCACATGAAGAAGAAAAGTGAAGAGACACAGCAGCAAGGGAGCATTATTGGTAATTGGAAGCCAAATAATAATGTTATTGGTAGAGAAGCTAATAATAACACATCATTGAAGAAGACCACTAACAATGCTCATCAAATTACACAAACACTCCCTCTTGCTCCTTATTGTGATAACGTTATCTCATCAACGGCTGATTATCCTCTTTATCAGTCTCAAACCGCCATTCCTGATGCTACTTTCAAATTCCCTAATAATAATAATCAATTTGGTGGTCTCATCAACAACAATGGCATTATTGGTAGACTTCATCATCAGAATAATAATAATAATAATCATGTTCGTTCCATTATGCTGAACCTGATGCAGCAGCCGCAACAGTTGATGGTGCAAAATCATTATCATCATGATCCAGCTCATTCATCATCAAACATGTTTCAACAGTCTGATTATTATCCGATGGCTGCTCCTCGGTATGAAAGATATGATGAAGGTCCTTTTCAAGTGGGAATGAGTAGGGGAGGGGTGGGTTGTGAGAGTTCTCCTCTCTTTGATTATTATAACACATGTTCATCAACACCCCTTGGTCATCATCAAATGAACAATTCATTCGGAGAAAGCGGCACCATTGCTGAGTTTCATGGTGGCTATAATACTTCTCCAGCCGCAGCATCATCATCATCCCTTTCTTCTCCTGCAGCAGGATTCTTTTCATCAAGAACCCAGCAAGAGCAGCAGCTTCCTAACTATCCAACAAGTTTGGCATATGTAGCAGCAGAAGCTCTTTCTTATCTCTCAAATTCTGCCACACAAGTTAACAATCTATATAACTCTTCTTCTTCATCATTATTTGATGATTATCAATTAGGACAAACTTTATTTCAAGGATAA 1632 0.3977 MAANNNNNPHDHDPDHQLSTALRLLVVDHDPANLNLIQDLAFQCNYRVTTCCEGSEALNLLREKRECFDVVLCDVHMPGMVDGSPLFDHVLQEFNIPVVVTCSMDDASSSSTVMESMKKQKGACYNLVKPITEEGLSNILQSVSIEKTRKKDYCDDVESEETMNKKKRRSLSIEERDDHHDLQHQQQQPNTPNKKPRFVWTNERHQKFVDAVFHLGIDKAVPKKIMELMDMPQLTRENVASHLQKFRIHMKKKSEETQQQGSIIGNWKPNNNVIGREANNNTSLKKTTNNAHQITQTLPLAPYCDNVISSTADYPLYQSQTAIPDATFKFPNNNNQFGGLINNNGIIGRLHHQNNNNNNHVRSIMLNLMQQPQQLMVQNHYHHDPAHSSSNMFQQSDYYPMAAPRYERYDEGPFQVGMSRGGVGCESSPLFDYYNTCSSTPLGHHQMNNSFGESGTIAEFHGGYNTSPAAASSSSLSSPAAGFFSSRTQQEQQLPNYPTSLAYVAAEALSYLSNSATQVNNLYNSSSSSLFDDYQLGQTLFQG 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181269g00048 543 NCBIfam myb-like DNA-binding domain, SHAQKYF class 195 249 IPR006447 GO:0003677
Stsc181269g00048 543 Gene3D - 191 253 - -
Stsc181269g00048 543 Gene3D - 21 167 - -
Stsc181269g00048 543 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 138 529 IPR044841 GO:0003700|GO:0006355
Stsc181269g00048 543 FunFam Two-component response regulator 191 254 - -
Stsc181269g00048 543 MobiDBLite consensus disorder prediction 253 272 - -
Stsc181269g00048 543 MobiDBLite consensus disorder prediction 154 184 - -
Stsc181269g00048 543 Pfam Response regulator receiver domain 25 140 IPR001789 GO:0000160
Stsc181269g00048 543 MobiDBLite consensus disorder prediction 154 197 - -
Stsc181269g00048 543 SUPERFAMILY Homeodomain-like 193 252 IPR009057 -
Stsc181269g00048 543 SUPERFAMILY CheY-like 22 143 IPR011006 -
Stsc181269g00048 543 MobiDBLite consensus disorder prediction 257 272 - -
Stsc181269g00048 543 ProSiteProfiles Response regulatory domain profile. 23 144 IPR001789 GO:0000160
Stsc181269g00048 543 SMART REC_2 22 140 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181269g00048 Stsc-Chr181269 189902 191883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181269g00048 17 261 Response Regulator Gene Family AT4G31920 40.000 1.67e-44 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc181269g00048 Response_reg 7.4e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181269g00048 - K14491 adu:107481405 403.29