Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181269g00047 ATGGCGATGGCGAAAGAGAAAGAGGAGGATGAAGAGCACAACCACAACGGTGGCAAGAGGCTCAAATGCATGAGGAACGAAGGTAAAGAGGATGATGCGGTTATTGCAAGTCCAGAAGAGGACACTGAGCTTCCTTTGAAGCCAGGGATCTTCTTCTACCCACCAACACCAACCTCCTTTGTTGTTTGTGATGCACTTGAACCTGATCTCCCCATCATCTATGTCAACAAGGTCTTTGAAATCTTCACCGGCTATCGTGCTGACGAGGCTCTCGGTCGAAACTGTCATCCGCCTATGAAAAGGATTTGTAATGGAGGAGGAGATGGATTAACGATGTCACTTCTTCATTGTATCAATGCTAAGGAAGCTAGCATGCCAGAGTTCATGTTCGTCTCACTCGATCCTGTTCAGCTTTGTTTCCTGACAGGAGAGTTTGAGCTCTGGGTTATTAGAAGATGCCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCCGAAAGGATGGTACTCCTGTGGTGAATAGACTAAGACTTGCACCGATTCACGATGATGATGGAACTGTGACACACGTAATAGGTATCCAACTATTTTCTGAAGCAAATATTGATCTGAACCGTGTCTCATACCCAGTTTTCAAGAAGACTTGCAATCAAGATTTCGATAAGACCGGTAAATTTCCCCCTAAGAGTGGACAAGCATTGTACAGTCAGCCCCAAGAGCTGTGTGGTATTCTTCAGCTTTCTGATGAAGTCCTGGCTCACAACATTTTGTCGCGTTTGACACCAAGGGATGTTGCATCCATTGGGTCTGTATGCAGGAGGATCCGCCAACTGACAAAGAATGAACATGTCAGGAAGATGAAGTTAGGATGGGGTCGTCTAACACGGGAACTTACTACTCTTGAGGCCGTTTGTTGGAGAAAACTGACAGTTGGAGGTGCAGTGGAACCTTCCCGCTGCAATTTCAGCGCTTGCGCTGCAGGGAATCGTCTTGTTTTGTTTGGAGGTGAAGGAGTAGACATGCAACCTATGGATGACACTTTTGTTCTAAATCTTGATGCTAAAAATCCAGAATGGCGCAGGATTAGTGTGAAATCATCCCCACCCGGGAGATGGGGCCACACACTATCGTGCTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTCCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAGGTCTGTGGTGGAACCCCGCCACTTCCAAGATCTTGGCACAGTTCTTGCACAATTGAAGGGTCAAAGTTGGTTGTCTCTGGTGGGTGCACAGACGCCGGGGTGCTTCTTAGCGACACATATCTATTGGACCTTACAACAGGTAATCCAACATGGAGAGAAATTCCAACATCATGGGCACCACCTCCTCGTTTGGGGCACTCACTATCAGTCTATGGGAGGACAAAAATTCTCATGTTTGGTGGACTTGCCAAGAGTGGGCACTTGCGCTTAAGATCAGGTGAGGCTTACACAATTGATCTAGAAGATGAACAACCACACTGGAGACAACTGGAATACAGTGCCTTCACTGGAGTAGCTAGTCAAAGTGCTGTGGTTCCTCCCCCAAGGCTAGATCATGTTGCTGTCAGCATGCCTTGTGGAAGAATCATTGTTTTTGGAGGTTCCATTGCAGGTCTTCACTCACCATCTCAGCTCTTTCTGTTGGATCCGGCTGAGGAGAAACCTTCATGGAGGATCCTCAATGTTCCAGGGCAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACAAGGGTTTTGGTTCTTGGCGGACACACAGGAGAGGAGTGGATACTGAACGAGTTGCATGAGTTATGCTTGGCAAGCCGACAGGATTCCGACCTGTGA 1923 0.4727 MAMAKEKEEDEEHNHNGGKRLKCMRNEGKEDDAVIASPEEDTELPLKPGIFFYPPTPTSFVVCDALEPDLPIIYVNKVFEIFTGYRADEALGRNCHPPMKRICNGGGDGLTMSLLHCINAKEASMPEFMFVSLDPVQLCFLTGEFELWVIRRCLEEGIEFQGELLNFRKDGTPVVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKKTCNQDFDKTGKFPPKSGQALYSQPQELCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRISVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTGNPTWREIPTSWAPPPRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPHWRQLEYSAFTGVASQSAVVPPPRLDHVAVSMPCGRIIVFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181269g00047 640 SUPERFAMILY PYP-like sensor domain (PAS domain) 61 197 IPR035965 -
Stsc181269g00047 640 Gene3D - 520 638 IPR015915 GO:0005515
Stsc181269g00047 640 SUPERFAMILY Kelch motif 307 524 IPR015915 GO:0005515
Stsc181269g00047 640 Pfam Kelch motif 545 592 IPR011498 GO:0005515
Stsc181269g00047 640 SUPERFAMILY Kelch motif 527 631 IPR015915 GO:0005515
Stsc181269g00047 640 Gene3D PAS domain 55 208 - -
Stsc181269g00047 640 FunFam Putative LOV domain-containing protein 298 503 - -
Stsc181269g00047 640 Pfam PAS domain 61 96 IPR000014 -
Stsc181269g00047 640 Pfam PAS domain 150 196 IPR000014 -
Stsc181269g00047 640 Gene3D - 300 519 IPR015915 GO:0005515
Stsc181269g00047 640 Pfam Galactose oxidase, central domain 321 371 - -
Stsc181269g00047 640 Pfam F-box domain 246 283 IPR001810 GO:0005515
Stsc181269g00047 640 Gene3D - 241 288 - -
Stsc181269g00047 640 FunFam Putative LOV domain-containing protein 504 636 - -
Stsc181269g00047 640 SUPERFAMILY F-box domain 241 311 IPR036047 GO:0005515
Stsc181269g00047 640 MobiDBLite consensus disorder prediction 1 23 - -
Stsc181269g00047 640 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 289 634 - -
Stsc181269g00047 640 Pfam Galactose oxidase, central domain 386 433 - -
Stsc181269g00047 640 Pfam Galactose oxidase, central domain 435 486 - -
Stsc181269g00047 640 SMART pac_2 161 202 IPR001610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181269g00047 Stsc-Chr181269 183602 186863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181269g00047 59 198 AGC Kinase Gene Family AT5G58140 32.857 4.21e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181269g00047 K12116 - gmx:100301889 1073.15