Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181269g00045 ATGCTAACAAGAAGAAAAATCCTCACCTTGTTCTCAACCAAATACGCTTCTCGCCAATTCAATGAAGTTTCCAAGTTATCACAAGTTCCTTCATACCCTTATTCTGAAATCCATAAAACCCTAAACCCCTTTAGGGTTTTTCTCTTGTGCGCATGGAGTTCGACCCAAGCATCGAAATTCCCAGAATACGAGATGCCATCGGTGACGTGGGGCGTGATTCAAGGTCGCAAGGAGAAGCTGGTATCGCGGGTCATCGTATTCGACTTCCTCAGGGGCTTGGGTATTGTCCCTGACGAGTTGCAGGACCTTGAGCTACCTTCGACAGTTGAAGTCATGAGGGAGCGCGTCGAGTTCCTCCAGAAACTAGGGATAACAATTGATGACATCAATGACTACCCTTTGATGTTGGGATGCAGTGTGAGGAAGAACATGATTCCTGTTTTGGGGTACTTGGAAAAAATCGGGATTTCAAGGTCCAAACTTGGGGGATTCATTAAGAGCTATCCGCAGGTGTTGCATGCTAGTGTGATTGTTGAGCTTGTCCCTGTTGTAAAGTTCCTCAGGGGTCTTGATGTGGAGAGGGAGGATATTGGGTATGTGTTGCAGAAGTACCCTGAACTTCTAGGGTTCAAGCTTGAGGGTACTATGAGTACATCAGTGGCTTATCTTGTTAGTATTGGTGTTAATCCTAGAGATATTGGTCCCATGGTGACTCAGATGTTGGAGAAGAGGGCCTATTTGCTTGGATATGATCTTGAAGAGACTATCAAGCCAAATGTGGATTGTTTGATTAGCTTTGGGATTGGGAAGGAATCTTTGCCTTCTGTTATTGCTCAGTATCCTCAGATTCTTGGGTTGCCCCTCAAGGCCAAGTTGTCTTCACAGCAGTACTTCTTCAGTTTGAAGCTTAAGATTGATCCTGAAGGTTTTGCGCAAGTTGTGGAGAAGATGCCGCAGGTGGTTAGCCTTCACCAGAACGTGATAATGAAGCCAGTGGAGTTCCTCCTTGGGAGGGCGATAGCGCTGCATGATGTGGCTAGCATGGTGGTCAAGTGTCCACAGTTAGTAGCACTCAGAGTGGAGCTCATGAAGAACAGTTTTTACTTCTTAAAGACTGAGATGGGAAGACCACTGAAAGAGCTTGTGGAGTTCCCCGAATACTTTACTTACAGTCTGGAGTCTAGGATCAAGCCAAGATACCAAAGACTAAAGAGCAAGGGGATAAGGTGTTCGTTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGGTTGCAGGGTAATTATATTGAGACTGAAAGTACAGGTCCGACATTTTTAATGGGTGGGAAATTGAACCTACCAGGGAATGCAATTCTTTCAGATGAGGAAGAGGAGAGTGATGATGAAGTACTATACAGAAGAACTGTTTCTTTATAA 1425 0.4477 MLTRRKILTLFSTKYASRQFNEVSKLSQVPSYPYSEIHKTLNPFRVFLLCAWSSTQASKFPEYEMPSVTWGVIQGRKEKLVSRVIVFDFLRGLGIVPDELQDLELPSTVEVMRERVEFLQKLGITIDDINDYPLMLGCSVRKNMIPVLGYLEKIGISRSKLGGFIKSYPQVLHASVIVELVPVVKFLRGLDVEREDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQMLEKRAYLLGYDLEETIKPNVDCLISFGIGKESLPSVIAQYPQILGLPLKAKLSSQQYFFSLKLKIDPEGFAQVVEKMPQVVSLHQNVIMKPVEFLLGRAIALHDVASMVVKCPQLVALRVELMKNSFYFLKTEMGRPLKELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGNYIETESTGPTFLMGGKLNLPGNAILSDEEEESDDEVLYRRTVSL 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181269g00045 474 PANTHER CGI-12 PROTEIN-RELATED 147 428 IPR003690 GO:0003690|GO:0006355
Stsc181269g00045 474 FunFam Transcription termination factor MTERF4, chloroplastic 218 432 - -
Stsc181269g00045 474 SMART mt_12 238 269 IPR003690 GO:0003690|GO:0006355
Stsc181269g00045 474 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Stsc181269g00045 474 SMART mt_12 198 229 IPR003690 GO:0003690|GO:0006355
Stsc181269g00045 474 SMART mt_12 378 409 IPR003690 GO:0003690|GO:0006355
Stsc181269g00045 474 SMART mt_12 162 193 IPR003690 GO:0003690|GO:0006355
Stsc181269g00045 474 SMART mt_12 311 341 IPR003690 GO:0003690|GO:0006355
Stsc181269g00045 474 SMART mt_12 346 377 IPR003690 GO:0003690|GO:0006355
Stsc181269g00045 474 SMART mt_12 274 306 IPR003690 GO:0003690|GO:0006355
Stsc181269g00045 474 Gene3D Transcription termination factor 3, mitochondrial 215 434 IPR038538 -
Stsc181269g00045 474 Pfam mTERF 148 239 IPR003690 GO:0003690|GO:0006355
Stsc181269g00045 474 Pfam mTERF 236 424 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181269g00045 Stsc-Chr181269 174995 176500 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc181269g00045 mTERF 3.7e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181269g00045 K15031 - mof:131162390 705.286