Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc181269g00043 | ATGGCTGAACGCGGTGGCGGAGATCGTGGCGGCTTCGGCCGTGGCTTCGGAGGTCGCGGTGGTCGCGGAGACAGGGGCCGCGGTGGGCGCCGAAGGGGCGGTGGGCGCCGCGAGGAAGAGGAGAAGTGGGTCCCAGTGACGAAGCTGGGTCGGCTGGTGAAAGAGGGAAAGATCAGTAGCCTGGAACAAATCTACCTTCACTCTCTCCCAATCAAGGAACACCAAATAGTTGACACGTTGGTTGGTCCTTCTTTGAAGGATGAAGTCATGAAGATCATGCCCGTTCAGAAACAGACACGTGCCGGTCAGAGAACCCGTTTCAAGGCCTTCGTTGTCGTCGGTGACAATAACGGCCACGTCGGACTCGGTGTTAAGTGCAGCAAGGAGGTTGCAACCGCCATTCGCGGTGCCATCATTTTGGCGAAGCTTTCGGTGATTCCTGTGAGGAGAGGTTACTGGGGTAACAAGATCGGAAAGCCACACACCGTCCCCTGCAAGGTCACCGGAAAATGTGGTTCCGTCACCGTCCGTATGGTCCCCGCTCCTCGTGGTTCTGGAATTGTTGCTGCTAGGGTTCCCAAGAAGGTCTTGCAGTTTGCAGGGATTGACGATGTATTCACTTCTTCTAGAGGATCCACCAAAACCCTTGGAAATTTCGTTAAGGCTACATTCGAGTGTTTGCTGAAAACCTACGGTTTCCTTACACCTGATTTCTGGAGGGAGACTCGCTTCTCTAAATCTCCATTCCAGGAATACACTGATCTACTTGCCAAGCCAACAGCCAAGGCCCTCATCTTGGAGGATGAAAGGGTTGAGGCTTAA | 822 | 0.5414 | MAERGGGDRGGFGRGFGGRGGRGDRGRGGRRRGGGRREEEEKWVPVTKLGRLVKEGKISSLEQIYLHSLPIKEHQIVDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFSKSPFQEYTDLLAKPTAKALILEDERVEA | 273 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc181269g00043 | 273 | FunFam | 40S ribosomal protein S2 | 148 | 241 | - | - | |
Stsc181269g00043 | 273 | NCBIfam | 30S ribosomal protein S5 | 38 | 245 | IPR005711 | GO:0003735|GO:0006412|GO:0015935 | |
Stsc181269g00043 | 273 | ProSitePatterns | Ribosomal protein S5 signature. | 102 | 134 | IPR018192 | - | |
Stsc181269g00043 | 273 | Pfam | Ribosomal protein S5, N-terminal domain | 85 | 149 | IPR013810 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Stsc181269g00043 | 273 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Stsc181269g00043 | 273 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 161 | 241 | IPR020568 | - | |
Stsc181269g00043 | 273 | PANTHER | RIBOSOMAL S SUBUNIT | 38 | 231 | IPR000851 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Stsc181269g00043 | 273 | FunFam | 40S ribosomal protein S2 | 42 | 147 | - | - | |
Stsc181269g00043 | 273 | Gene3D | - | 148 | 240 | IPR014721 | - | |
Stsc181269g00043 | 273 | SUPERFAMILY | dsRNA-binding domain-like | 81 | 150 | - | - | |
Stsc181269g00043 | 273 | Pfam | Ribosomal protein S5, C-terminal domain | 169 | 240 | IPR005324 | GO:0003735|GO:0005840|GO:0006412 | |
Stsc181269g00043 | 273 | ProSiteProfiles | S5 double stranded RNA-binding domain profile. | 85 | 148 | IPR013810 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Stsc181269g00043 | 273 | Gene3D | - | 42 | 147 | - | - | |
Stsc181269g00043 | 273 | MobiDBLite | consensus disorder prediction | 20 | 41 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc181269g00043 | Stsc-Chr181269 | 165317 | 166748 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc181269g00043 | 39 | 272 | Cytoplasmic Ribosomal Protein Gene Family | AT3G57490 | 86.441 | 7.97e-152 | 423 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc181269g00043 | K02981 | - | gmx:100797105 | 469.929 |