Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181269g00032 ATGCTCCTCTTCTTCACCAGGCAGGTAAACAAAAGATGTAGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCGTGCCTTTGTCAATCTCACACCAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCTATGTCAGCAGTCTCGTCTAGAGCATTCCGTTTATACGGTGACAAAAATCCAGATGGGATTCATATTGACATACCAATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCACTCCAAATGCCAGAATTGTTCAGGAAAAAGACTCTAGTAACATGAAAATGCAAGTAAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCCTTATTACTTAACTATGGCTGTCTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATACAATCAAACCCATATGACTGCATTGAACTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCTCAGCAGCAGGAGTCTCATCACCAAATTTCTCAGCACCTGCTGCATGGCAGGCACAGATTCTTGCTCAGCTAAATCTTGCTGGAGAAGCTCCAGATCTCAAGGTGAGCATAGGTGGTGAGAGTGTGGTAGAGGGGCGTTTGTTGGCTGCATTGAGAGTACTCCTTTCAAGTAATATGGAAAGCGTGCAGAAGCATGACCTCAACACACTCAAGTCTTTATCAGCTGAAGCCCCGCTGGGTGTTGCAAATGAAACAGCTGTATTGCGTACGCTTATAGCTCTGTGTGTGATTGCGTTGGGACACTTCCCCACCAAAATAATGGATGATGAATCACTGCTGAAGCTGGGTGCTTCAGGTTCAACTGAGTTGGCCATTCAATACAGAATCCAAAAGAAAACTGTGATTGTTGATGCCATGAGAGATCTCTCAAGGAGGGTAAAGCTTCTCTCTTCCAAGGAAACAACAATGAGTGCTGAAGGCTAA 969 0.4324 MLLFFTRQVNKRCRFLLDFEQEVKRAFVNLTPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGDKNPDGIHIDIPMMLPLIDMCNHSFTPNARIVQEKDSSNMKMQVKVVAETAIKEDDPLLLNYGCLNNDFFLLDYGFVIQSNPYDCIELKYDGALLDAASSAAGVSSPNFSAPAAWQAQILAQLNLAGEAPDLKVSIGGESVVEGRLLAALRVLLSSNMESVQKHDLNTLKSLSAEAPLGVANETAVLRTLIALCVIALGHFPTKIMDDESLLKLGASGSTELAIQYRIQKKTVIVDAMRDLSRRVKLLSSKETTMSAEG 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181269g00032 322 SUPERFAMILY SET domain 8 144 IPR046341 -
Stsc181269g00032 322 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 9 286 - -
Stsc181269g00032 322 CDD SET_LSMT 7 140 - -
Stsc181269g00032 322 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 136 315 IPR036464 -
Stsc181269g00032 322 Pfam SET domain 47 126 IPR001214 GO:0005515
Stsc181269g00032 322 FunFam SET domain containing protein 162 315 - -
Stsc181269g00032 322 Gene3D set domain protein methyltransferase, domain 1 5 140 - -
Stsc181269g00032 322 Gene3D - 168 317 IPR036464 -
Stsc181269g00032 322 Pfam Rubisco LSMT substrate-binding 174 296 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181269g00032 Stsc-Chr181269 127792 130389 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc181269g00032 Rubis-subs-bind 5.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181269g00032 - - gmx:100778387 501.13