Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181269g00031 ATGAGGTTGGGTTTGAAGCTGCTTCAAGAAAGAGCTATAGTTGGATCCTTTTGGTGGCCATACATCAGCAATCTCCCTGAGACATACACTGTCCCTATCTTCTTCCCCGGAGAGGACATAAAGAACTTGCAGTATGCTCCTCTTCTTCACCAGGTAAACAAAAGATGTAGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCGTGCCTTTGTCAATCTCACACCAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCTATGTCAGCAGTCTCGTCTAGAGCATTCCGTTTATACGGTGACAAAAATCCAGATGGGATTCATATTGACATACCAATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCACTCCAAATGCCAGAATTGTTCAGGAAAAAGACTCTAGTAACATGAAAATGCAAGTAAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCCTTATTACTTAACTATGGCTGTCTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATACAATCAAACCCATATGACTGCATTGAACTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCTCAGCAGCAGGAGTCTCATCACCAAATTTCTCAGCACCTGCTGCATGGCAGGCACAGATTCTTGCTCAGCTAAATCTTGCTGGAGAAGCTCCAGATCTCAAGGTGAGCATAGGTGGTGAGAGTGTGGTAGAGGGGCGTTTGTTGGCTGCATTGAGAGTACTCCTTTCAAGTAATATGGAAAGCGTGCAGAAGCATGACCTCAACACACTCAAGTCTTTATCAGCTGAAGCCCCGCTGGGTGTTGCAAATGAAACAGCTGTATTGCGTACGCTTATAGCTCTGTGTGTGATTGCGTTGGGACACTTCCCCACCAAAATAATGGATGATGAATCACTGCTGAAGCTGGGTGCTTCAGGTTCAACTGAGTTGGCCATTCAATACAGAATCCAAAAGAAAACTGTGATTGTTGATGCCATGAGAGATCTCTCAAGGAGGGTAAAGCTTCTCTCTTCCAAGGAAACAACAATGAGTGCTGAAGGCTAA 1098 0.4344 MRLGLKLLQERAIVGSFWWPYISNLPETYTVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEQEVKRAFVNLTPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGDKNPDGIHIDIPMMLPLIDMCNHSFTPNARIVQEKDSSNMKMQVKVVAETAIKEDDPLLLNYGCLNNDFFLLDYGFVIQSNPYDCIELKYDGALLDAASSAAGVSSPNFSAPAAWQAQILAQLNLAGEAPDLKVSIGGESVVEGRLLAALRVLLSSNMESVQKHDLNTLKSLSAEAPLGVANETAVLRTLIALCVIALGHFPTKIMDDESLLKLGASGSTELAIQYRIQKKTVIVDAMRDLSRRVKLLSSKETTMSAEG 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181269g00031 365 FunFam SET domain containing protein 205 358 - -
Stsc181269g00031 365 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 179 358 IPR036464 -
Stsc181269g00031 365 SUPERFAMILY SET domain 5 187 IPR046341 -
Stsc181269g00031 365 Gene3D set domain protein methyltransferase, domain 1 1 183 - -
Stsc181269g00031 365 Gene3D - 211 360 IPR036464 -
Stsc181269g00031 365 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 3 329 - -
Stsc181269g00031 365 Pfam Rubisco LSMT substrate-binding 217 339 IPR015353 -
Stsc181269g00031 365 Pfam SET domain 53 169 IPR001214 GO:0005515
Stsc181269g00031 365 CDD SET_LSMT 1 183 - -
Stsc181269g00031 365 FunFam Histone-lysine N-methyltransferase setd3 1 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181269g00031 Stsc-Chr181269 127634 130389 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc181269g00031 Rubis-subs-bind 6.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181269g00031 - - gmx:100778387 596.275