Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181269g00030 ATGGCTACTTCGAAGGCGGTTATGGCTTCCTTGACGCACTTGCGTCCGCTAACATGCGCCGCCTCATCCTCCTACCCTGCGCGACTGGTTCCTCACCCACCGGACCTCATCAAATGGGTCACCAGAGAAGGCGGCTTCGTCCACCCTGCCATCAAGATAGCTGTTAACCACTCCCACGGTCTAGGTTTACTCGCCAACCAACAAATCCCCAAAGGTTCCGACCTTATCGTTCTCCCCGACCACATTCCCTTGAGGTTTAACCACCAAGATCAAGATGCCACTCTTCAATTGGCACGCCATGTTCCAGAGGAACTGTGGGCCATGAGGTTGGGTTTGAAGCTGCTTCAAGAAAGAGCTATAGTTGGATCCTTTTGGTGGCCATACATCAGCAATCTCCCTGAGACATACACTGTCCCTATCTTCTTCCCCGGAGAGGACATAAAGAACTTGCAGTATGCTCCTCTTCTTCACCAGGTAAACAAAAGATGTAGGTTTCTTCTTGATTTTGAGCAAGAAGTCAAGCGTGCCTTTGTCAATCTCACACCAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCTATGTCAGCAGTCTCGTCTAGAGCATTCCGTTTATACGGTGACAAAAATCCAGATGGGATTCATATTGACATACCAATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCACTCCAAATGCCAGAATTGTTCAGGAAAAAGACTCTAGTAACATGAAAATGCAAGTAAAGGTTGTGGCTGAGACAGCAATCAAAGAAGATGATCCCTTATTACTTAACTATGGCTGTCTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATACAATCAAACCCATATGACTGCATTGAACTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCTCAGCAGCAGGAGTCTCATCACCAAATTTCTCAGCACCTGCTGCATGGCAGGCACAGATTCTTGCTCAGCTAAATCTTGCTGGAGAAGCTCCAGATCTCAAGGTGAGCATAGGTGGTGAGAGTGTGGTAGAGGGGCGTTTGTTGGCTGCATTGAGAGTACTCCTTTCAAGTAATATGGAAAGCGTGCAGAAGCATGACCTCAACACACTCAAGTCTTTATCAGCTGAAGCCCCGCTGGGTGTTGCAAATGAAACAGCTGTATTGCGTACGCTTATAGCTCTGTGTGTGATTGCGTTGGGACACTTCCCCACCAAAATAATGGATGATGAATCACTGCTGAAGCTGGGTGCTTCAGGTTCAACTGAGTTGGCCATTCAATACAGAATCCAAAAGAAAACTGTGATTGTTGATGCCATGAGAGATCTCTCAAGGAGGGTAAAGCTTCTCTCTTCCAAGGAAACAACAATGAGTGCTGAAGGCTAA 1419 0.4609 MATSKAVMASLTHLRPLTCAASSSYPARLVPHPPDLIKWVTREGGFVHPAIKIAVNHSHGLGLLANQQIPKGSDLIVLPDHIPLRFNHQDQDATLQLARHVPEELWAMRLGLKLLQERAIVGSFWWPYISNLPETYTVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLDFEQEVKRAFVNLTPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGDKNPDGIHIDIPMMLPLIDMCNHSFTPNARIVQEKDSSNMKMQVKVVAETAIKEDDPLLLNYGCLNNDFFLLDYGFVIQSNPYDCIELKYDGALLDAASSAAGVSSPNFSAPAAWQAQILAQLNLAGEAPDLKVSIGGESVVEGRLLAALRVLLSSNMESVQKHDLNTLKSLSAEAPLGVANETAVLRTLIALCVIALGHFPTKIMDDESLLKLGASGSTELAIQYRIQKKTVIVDAMRDLSRRVKLLSSKETTMSAEG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181269g00030 472 Gene3D set domain protein methyltransferase, domain 1 3 289 - -
Stsc181269g00030 472 FunFam SET domain containing protein 312 465 - -
Stsc181269g00030 472 Pfam SET domain 60 276 IPR001214 GO:0005515
Stsc181269g00030 472 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 286 465 IPR036464 -
Stsc181269g00030 472 SUPERFAMILY SET domain 31 294 IPR046341 -
Stsc181269g00030 472 Pfam Rubisco LSMT substrate-binding 324 446 IPR015353 -
Stsc181269g00030 472 ProSiteProfiles SET domain profile. 49 276 IPR001214 GO:0005515
Stsc181269g00030 472 Gene3D - 318 466 IPR036464 -
Stsc181269g00030 472 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 32 436 - -
Stsc181269g00030 472 CDD SET_LSMT 50 290 - -
Stsc181269g00030 472 SMART set_7 49 282 IPR001214 GO:0005515
Stsc181269g00030 472 FunFam Histone-lysine N-methyltransferase setd3 3 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181269g00030 Stsc-Chr181269 127634 130389 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc181269g00030 SET 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181269g00030 - - gmx:100778387 733.021