Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181269g00022 ATGGACGACGTCAAAGACAAGATGAAAGGCTTCATGAAAAAAGTCAACAACTCTTTTACATCTTCATCCTCCGCCAAATTCAAGGGCCAAGGTCGCGTCTTGGGATCTTCTTCATCATCTTCTTCTCCCTCTCCTCCTCCTCCTCCTCCTTATGCAACCGCTAATTCCATTTCCACCTCTCGCCCTCGCCCCGCCCCATCCCACAACCTCAATTCCAATTCCAAACCCACTCCTTCAACGGCAACCAATCCCAGGCCCGAGCCCCACAAACCCGCCGGCTTCGACCCTTTTGATTCATTGGTCACATCATCCAAGAGATCTCAAAATGGGTATTCACTTAACGTGTATGAGTGCCCCGTTTGTGGCAAATCTTTTAGATCCGAAGATGAGGTTTCTGAACATGTCGATACCTGTTTGAGTAACAACGGTGATTCAGCTGAGCGTGTTCATGTCTCTGAATTCTCAGAGAGTGGAGCTGACTCCAATGCTGATTTGGAGGTATGTGTTGGCACTTACGTCTCAGGGAAGCCTTCTGAGGGATCCATTGACATTGTTTTGAAGCTGTTGAAGAATGTTGTTAGAGAGCCTGAGAATGCAAAGTTTAGGAAGATCAGGTTGAGCAATCCTAAAATTAAGGAGGCTGTTGCTGATGTTACCGGTGGAATTGAGTTGATTACCTTTGTTGGCTTCGAACTCAGGGACGAGAATGGGGAGACTTGGGCTTTCATGGAGCTTCCTTCTGAGGACCAAATAAGATTGATCAAGAAAGCAACACTCTTGCTGGAATCACAGCTGCTGGTGCATGTATCTCCAAAGACTGAGAATTTGGCTGCACCTTCGGCTGAGAAGACAGATGCAAAGGTTGAACGCAAGCCGGTCGACAGACAGGTGAAGGTCTTCTTTGCCGTTCCTGAAAGTGTTGCAGTAAAAATTGAGCTACCAGATTCCTTCTATAAACTTTCAGTTGAAGAGGTGAGAAGAGAAGCTGAATCAAGGAGAAAAAAGATTGAAGAGTCTCAGCTTTTAATCCCTAAGTCCTATAAGGAAAAGCAAGCAAAAGCTGCCAAGAAGAGATACACAAAAGCTATTATTAGGGTTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTTCTCCATGGGAGCCAACTATGGCCCTCTATGAGTTTGTGAGCTCTGCATTGAAACAACCAGCTTTGGAGTTTGAGCTAATGCATCCCATAGTAGTCCAACGGCGAGCAATCCCTCGTTTCGGCAAAGCAGGAGAGAACAGCAAAACATTGGAGGATGAGGACTTGGTACCTTCAGCTCTAATTAAGTTCAAGCCTCTGGAAACAGATTCTGTTGTTTTCACGGGTCTCAAAAACGAATTGCTTGAAATGAGTGAGCCACTTGTAAATGCTTAA 1407 0.4542 MDDVKDKMKGFMKKVNNSFTSSSSAKFKGQGRVLGSSSSSSSPSPPPPPPYATANSISTSRPRPAPSHNLNSNSKPTPSTATNPRPEPHKPAGFDPFDSLVTSSKRSQNGYSLNVYECPVCGKSFRSEDEVSEHVDTCLSNNGDSAERVHVSEFSESGADSNADLEVCVGTYVSGKPSEGSIDIVLKLLKNVVREPENAKFRKIRLSNPKIKEAVADVTGGIELITFVGFELRDENGETWAFMELPSEDQIRLIKKATLLLESQLLVHVSPKTENLAAPSAEKTDAKVERKPVDRQVKVFFAVPESVAVKIELPDSFYKLSVEEVRREAESRRKKIEESQLLIPKSYKEKQAKAAKKRYTKAIIRVQFPDGVVLQGVFSPWEPTMALYEFVSSALKQPALEFELMHPIVVQRRAIPRFGKAGENSKTLEDEDLVPSALIKFKPLETDSVVFTGLKNELLEMSEPLVNA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181269g00022 468 ProSiteProfiles UBX domain profile. 357 441 IPR001012 GO:0005515
Stsc181269g00022 468 Coils Coil 322 342 - -
Stsc181269g00022 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 146 IPR013087 -
Stsc181269g00022 468 FunFam UBX domain-containing protein 6 351 442 - -
Stsc181269g00022 468 MobiDBLite consensus disorder prediction 54 80 - -
Stsc181269g00022 468 Pfam PUB domain 179 254 IPR018997 -
Stsc181269g00022 468 Pfam UBX domain 357 437 IPR001012 GO:0005515
Stsc181269g00022 468 SUPERFAMILY PUG domain-like 178 264 IPR036339 -
Stsc181269g00022 468 MobiDBLite consensus disorder prediction 1 103 - -
Stsc181269g00022 468 SUPERFAMILY Ubiquitin-like 327 441 IPR029071 -
Stsc181269g00022 468 Gene3D - 174 263 - -
Stsc181269g00022 468 MobiDBLite consensus disorder prediction 14 40 - -
Stsc181269g00022 468 Gene3D - 351 444 - -
Stsc181269g00022 468 Gene3D Classic Zinc Finger 112 143 - -
Stsc181269g00022 468 CDD PUB 174 263 - -
Stsc181269g00022 468 SMART PGNneu 180 247 - -
Stsc181269g00022 468 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181269g00022 Stsc-Chr181269 96379 99034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181269g00022 1 389 C2H2 Transcription Factor Family AT2G01650 54.887 1.73e-138 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181269g00022 UBX 5.3e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181269g00022 K14011 - gmx:100779271 620.542