Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181269g00018 ATGCCTATATATAATGCCAAAGTGGCGTTCGGTTATTTTCAGAATCCATCGTCTCTAAGTTTCAAAACTACACTACTCAAACTGTTTTCAGTGATCGCGATGTCAAAAATGTCTGCTCCCAAAGAGAAGAAGCCCAAACAGTCCAAAACCGCTTCTCACCCTCCATATTTTCAGATGATTAAGGAAGCGTTGGTGGCTCTGAACGAGAAAGGTGGTTCGAGCCCTCACGCGATCGGCAAGTACATGGAGGATAAGTTCAAGGCGGTGCTGCCTGCAAATTTCAGGAAGATTCTGGCGTTGCAGCTCAAGAACCAAGCAGCCAAAGGGAATCTCCTCAAGATCAAGGCCTCCTACAAGCTCTCCGGTGCCTCCAAGAAGAACAAGAAGGAAATCTCTGCCCCCGCCAAGGCCATGAAGAAGAAGCGAATCTCTGCCCCTGCCAAGGCCATGGAGAAGAACCAGAGCCGCTCCGTGAAGAAGACAAAGAAGGTGTCGACGCCGGCGAAACCGAAGCAGCCAAAGTCGCTAAAGTCTCCGGCAAAGAGGAGCAGGAAGGGCACTGCAGCTGCCTGA 573 0.5044 MPIYNAKVAFGYFQNPSSLSFKTTLLKLFSVIAMSKMSAPKEKKPKQSKTASHPPYFQMIKEALVALNEKGGSSPHAIGKYMEDKFKAVLPANFRKILALQLKNQAAKGNLLKIKASYKLSGASKKNKKEISAPAKAMKKKRISAPAKAMEKNQSRSVKKTKKVSTPAKPKQPKSLKSPAKRSRKGTAAA 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181269g00018 190 SUPERFAMILY "Winged helix" DNA-binding domain 49 131 IPR036390 -
Stsc181269g00018 190 Gene3D - 47 133 IPR036388 -
Stsc181269g00018 190 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 52 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc181269g00018 190 SMART h15plus2 50 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc181269g00018 190 MobiDBLite consensus disorder prediction 123 190 - -
Stsc181269g00018 190 MobiDBLite consensus disorder prediction 123 137 - -
Stsc181269g00018 190 PANTHER HISTONE H1 37 184 - -
Stsc181269g00018 190 CDD H15 50 129 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc181269g00018 190 PRINTS Histone H5 signature 141 155 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc181269g00018 190 PRINTS Histone H5 signature 174 190 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc181269g00018 190 PRINTS Histone H5 signature 39 60 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc181269g00018 190 PRINTS Histone H5 signature 66 83 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc181269g00018 190 Pfam linker histone H1 and H5 family 53 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181269g00018 Stsc-Chr181269 73933 74606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181269g00018 59 120 Single Myb Histone (SMH) Gene Family AT1G49950 37.097 2.88e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181269g00018 K11275 - gmx:100500169 194.126