Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181268g00028 ATGGCAGATCTCATATCACAGTTGAAAAGTATTGGCGCTCTTGCGTTGTTCTTGGTTTGTGTGTACTCATCAAACAACAGTATTAGCGTTGATGAAGCTACTTACATGCTAGAGCTTCGGAACGCTGTAACCCCTACTCCTTCCAACTGGATCATCAACAAGAAGACAACCATATGCATGTGGCATGGCGTCAATTGCAGCTCCCACGCTGATGGTAGCAGTTACATACAAAGCATCCACCTATCTTTAATGAAACTCACTGGAACACTGCCTTCAGGACTCAACAACTCCCTCTCCTTCCTACAATCCCTCGATGTCCAAGGCAACACACTCACTGGCCCTATTCCCTCCTTTGCCAACCTCAACAACCTCCAACACCTGCACCTCGGTCTCAACAATTTCACCTCCATCCCTCAAGATTCTTTCCAGAATCTTTCAAATTTGTTGAGTTTCACTTTCTGCTGCAACAACAACCTCGCACCGTGGACATTTCCAACCGATTTGATTCACTCCTCAAGACTCAACATCATCTTCCTCCCAAATTCAAACCTCGTGGGATCTTTGCCCGATATATTCGGTTCATTCCCCAACTTGCAAGTTTTAAAGCTTCAAAGAAATCGTTTAACTGGCGTGGTTCCAACTTCTCTTGTGTACCTCTCGAGATTGCAGAACATTTCTTTGGAGGAGAACCTGCTACAGGGCCCTTATCCTGTGTTTATTAGGTCCACTGTAAGGCAACTGATCAGTCTTGCCGGTAACGGGTTCTGTTTAAACCATGATGGACCGTGCGACCAGAGAGTGACGACTTTGCTTCAAGTTGCAGAGGCATTTGGGTACCCATACGTGTTGGCGAGTTCATGGCAAGGGAACAATCCTTGTAACGGTTGGAATTTCATTGCATGCGATGATGGGGGGAGTAAGATCACAAGTGTGAATTTAACAAAGTTGAATTTGACAGGTACGATCTCAGCTTCATTTGGGAACTTAAGTGATTTGAGGGAGTTGTATCTTGGTGGAAATAACTTGAGTGGTTCCATACCTGATAGCTTGGCAAGTCTATCTCAACTCACTGTTGTGGATGTGTCCAATAACAACCTATCAGGGAGCTTCCCCATTTTTTCACATAACATCGCCCTCTCTTGCATGGGTAATGCATTTCTTACTTGTTCTCAACCCAACAATGCAAATGGTCTCTCACCTTCTTCCATAGCAGGTATAACACTAGGGGGTTCCGCGGTTATTGTAATAGTTGCTATGATTGTTTATGATCATAAGAGGTGTTTTAATTTTGTACAGAGGATGATACTGTTGAATAAAAAAACATCATCGTCTGATAACCGTAACGTTGAAGATCTCATCAAAAGTTACGGTGCCTTGACTCCCACAAGATATACCTATGCAGAAGTGAAACGAATGACAAATTCGTTTAACGAAAAATTAGGAGAAGGAGGATATGGTGTTGTGTACAAAGCAAGTTTAATTAATGGTCAACAATTGGCTGTAAAAATATTGAAAGAGTTAAAAGGAAGTGGGGAAGAATTTGTAAATGAGGTTGTCACTATTATCAGAACATCTCATGTGAATGTTGTTTCACTTTTCGGATTTTGCTATGAGAGGAATAAAAGAGCTCTTATATATGACTTCATGTCCAATGGATCTTTGGACAAATTCATATATTCTTCCAATGCTATTCATAATTTGGAATGGAATACATTATACCAAATTATAATTGGCATCGCTCGAGGATTGGAATACTTACATCAAGGATGTAATACAAAAATTTTACATCTTGATATCAAGCCTCAAAATATTTTGTTAGATGACAAATTTTGTCCTAAAATTGCAGATTTTGGTCTAGCTAAAATTTGTAAAAGGGATAAAAGTGTTGCATCTATATTAGGTACAAGAGGGACTCCGGGATATATTGCACCAGAAATGTTTAATCGAACATATGGTGGAGTTTCTCACAAGTCGGATGTATATAGTTATGGCATGTTGATTCTTGAAATGATTGGGAAAAGAAAAAATGGTTATAGTGGAGAATCACATTCCAGTGAAGTATTGTACTTTCCAGAATGGATTTACAAGGAGATTGAGCAAGGCAGCATTCGTAGAGGATATATGTCTAACATAAAAGAAGAAAATGAGATGATAAGGAAGGTTACATTAGTAAGTTTGTGGTGTATTCAAACAAATCCATTAGAAAGACCATCTATGAGAAAAGTTCTAGACTTGATGGAAGGACCACTTCAAGCAGTTCCTCATCCGCCAAAGCCTACCTTATATTCTCCTAAAAGACCTTCTGCAGAATTTTCTGATGCATCTCGTAGTAATGCAAGTGAGACAAATTCAATTACTACAGAGGAGAATGGTTTTGCAAACAAAATGAGCTCACGTTACATAAACATAGAAGCTGAATTTGGTTGGAAAATGCATGTAACTCGTAATTCTTATTGA 2457 0.3956 MADLISQLKSIGALALFLVCVYSSNNSISVDEATYMLELRNAVTPTPSNWIINKKTTICMWHGVNCSSHADGSSYIQSIHLSLMKLTGTLPSGLNNSLSFLQSLDVQGNTLTGPIPSFANLNNLQHLHLGLNNFTSIPQDSFQNLSNLLSFTFCCNNNLAPWTFPTDLIHSSRLNIIFLPNSNLVGSLPDIFGSFPNLQVLKLQRNRLTGVVPTSLVYLSRLQNISLEENLLQGPYPVFIRSTVRQLISLAGNGFCLNHDGPCDQRVTTLLQVAEAFGYPYVLASSWQGNNPCNGWNFIACDDGGSKITSVNLTKLNLTGTISASFGNLSDLRELYLGGNNLSGSIPDSLASLSQLTVVDVSNNNLSGSFPIFSHNIALSCMGNAFLTCSQPNNANGLSPSSIAGITLGGSAVIVIVAMIVYDHKRCFNFVQRMILLNKKTSSSDNRNVEDLIKSYGALTPTRYTYAEVKRMTNSFNEKLGEGGYGVVYKASLINGQQLAVKILKELKGSGEEFVNEVVTIIRTSHVNVVSLFGFCYERNKRALIYDFMSNGSLDKFIYSSNAIHNLEWNTLYQIIIGIARGLEYLHQGCNTKILHLDIKPQNILLDDKFCPKIADFGLAKICKRDKSVASILGTRGTPGYIAPEMFNRTYGGVSHKSDVYSYGMLILEMIGKRKNGYSGESHSSEVLYFPEWIYKEIEQGSIRRGYMSNIKEENEMIRKVTLVSLWCIQTNPLERPSMRKVLDLMEGPLQAVPHPPKPTLYSPKRPSAEFSDASRSNASETNSITTEENGFANKMSSRYINIEAEFGWKMHVTRNSY 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181268g00028 818 ProSiteProfiles Protein kinase domain profile. 474 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181268g00028 818 Pfam Leucine rich repeat 173 232 IPR001611 GO:0005515
Stsc181268g00028 818 Pfam Leucine rich repeat 307 366 IPR001611 GO:0005515
Stsc181268g00028 818 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515
Stsc181268g00028 818 MobiDBLite consensus disorder prediction 754 790 - -
Stsc181268g00028 818 ProSitePatterns Protein kinases ATP-binding region signature. 480 502 IPR017441 GO:0005524
Stsc181268g00028 818 Gene3D Transferase(Phosphotransferase) domain 1 549 753 - -
Stsc181268g00028 818 Gene3D Phosphorylase Kinase; domain 1 448 548 - -
Stsc181268g00028 818 Pfam Protein kinase domain 477 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181268g00028 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672|GO:0006468
Stsc181268g00028 818 SMART serkin_6 474 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181268g00028 818 Gene3D Ribonuclease Inhibitor 264 391 IPR032675 -
Stsc181268g00028 818 FunFam PR5-like receptor kinase 549 756 - -
Stsc181268g00028 818 PANTHER OSJNBA0070M12.3 PROTEIN 197 746 - -
Stsc181268g00028 818 SMART LRR_typ_2 121 144 IPR003591 -
Stsc181268g00028 818 SMART LRR_typ_2 195 218 IPR003591 -
Stsc181268g00028 818 SMART LRR_typ_2 329 352 IPR003591 -
Stsc181268g00028 818 SMART LRR_typ_2 353 375 IPR003591 -
Stsc181268g00028 818 SUPERFAMILY L domain-like 57 381 - -
Stsc181268g00028 818 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Stsc181268g00028 818 Pfam Leucine rich repeat N-terminal domain 267 302 IPR013210 -
Stsc181268g00028 818 ProSiteProfiles Leucine-rich repeat profile. 123 144 IPR001611 GO:0005515
Stsc181268g00028 818 FunFam Leucine-rich repeat receptor-like kinase 265 390 - -
Stsc181268g00028 818 Gene3D Ribonuclease Inhibitor 30 260 IPR032675 -
Stsc181268g00028 818 SUPERFAMILY Protein kinase-like (PK-like) 453 745 IPR011009 -
Stsc181268g00028 818 MobiDBLite consensus disorder prediction 770 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181268g00028 Stsc-Chr181268 208858 211427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181268g00028 438 766 Receptor kinase-like Gene Family AT5G38280 55.389 1.66e-122 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc181268g00028 Pkinase 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181268g00028 - K00924 aip:107635702 685.256