Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181268g00027 ATGCAGGTTGTTCGATCTCATCAGAGTCACAGCACCTTCTCCTCCTCCACTGGCTCCGTTTCAGCTTCTCCGACCCTTCCCCTTTATCGCTCCGCTCCAGAGCTCGAAGTCAGGCTAGAAGATTTCGAATCTTTTGCCGTCGATCGTCTCCGAGTTCTCAAGGGGATCTCTGATGGCTTGTCAAGGGGGAAGAAACCGGACGAAATGGAAAAATTGGTAAATGAGCTGTGGAAAACAAATATGAGACATCAAGATTCGTCTCAGGTTCTGAACAAGGATATTATATCTCATTTTGTTCTCCGTCTTGTGTATTGCAGAACGGAGGAATTGAGGAAATGGTTCCTTTCTATGGAATCTGCACTCTTTCGCCACCGTTTTCGTAATCAAACTGCTGAAGCTCAGCGAGCCATCATGGAAGAATTTGACCTTCCTTGCAAGGCTGTAAGCAATGCGGAATTTGAGAGCTTAAAAGAAAAATTGGGACAAGTTGCGCGTTCAATTGGTCATAACCATTCTTTACCCACTGCGGATGCGATCTACTATAAGGTACCATTTGAAGAAGTTCCAGAGCTTGTAGCTGGACGGAAAGTATTTATAAACCAGGGATATGCATACGTTGCAATGAATCAGGTTGTTTCACTTGTAGCCACAATTTTCCGTAGTCTGCTGTCAAAAGCACTCATCCTAACAAACAGAAAATGGGCAACCTCAATTAGAGAACAAGAGCAACACAGGTTGACTCCTATTGTGGAAGCCCTGTGTTCGAGTTATTTAGGTCCTGATTATTCTCAGCCTAAAGAATATGGTGAGATATCATTAAAGGACATTGATCAGCTTGCCAAGAGCTCATTTCCTTTGTGCATGCGTCACCTATATGAAAAGCTGAGAGAGGATCATCATTTAAAGCATGCAGGGAGGATGCAACTAGGCCTATTTCTCAAGGGTGTTGGCCTGAACGTAGATGATTCACTTGCATTTTGGAGAGAAGAGTTCTCTAAAAAGGTTGGTTTGGAGAAGTTTGAGAAAAATTATGCATACAACATACGCCATAATTACGGGAAAGAAGGGAAGAAAACTGATTATACTCCCTATTCTTGTCAAAAGATTATTTTATCAACTCCTGGTGTCGGAGATCATCATGGTTGCCCTTATCGACATTTTGGCGAGGAGAATTTAAGAGCTGCTCTCAGTAGAATGGGGGTTAATAGTCGGGCAATGGAAGATGTGATGGGCAAAGTGAGAAATAGAGATTATCAGTTGGCCTGCACCTTGACATTTGAAGCTCTTCATGCGGCACCATGTGATGCAGGGATTAACCATCCAAATCAATACTTCAGTGACAGTCAAAAGCTATTGAAGGCAAAGAAGGACTCTTCAGCGTAA 1383 0.4302 MQVVRSHQSHSTFSSSTGSVSASPTLPLYRSAPELEVRLEDFESFAVDRLRVLKGISDGLSRGKKPDEMEKLVNELWKTNMRHQDSSQVLNKDIISHFVLRLVYCRTEELRKWFLSMESALFRHRFRNQTAEAQRAIMEEFDLPCKAVSNAEFESLKEKLGQVARSIGHNHSLPTADAIYYKVPFEEVPELVAGRKVFINQGYAYVAMNQVVSLVATIFRSLLSKALILTNRKWATSIREQEQHRLTPIVEALCSSYLGPDYSQPKEYGEISLKDIDQLAKSSFPLCMRHLYEKLREDHHLKHAGRMQLGLFLKGVGLNVDDSLAFWREEFSKKVGLEKFEKNYAYNIRHNYGKEGKKTDYTPYSCQKIILSTPGVGDHHGCPYRHFGEENLRAALSRMGVNSRAMEDVMGKVRNRDYQLACTLTFEALHAAPCDAGINHPNQYFSDSQKLLKAKKDSSA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181268g00027 460 PANTHER DNA PRIMASE LARGE SUBUNIT 16 455 IPR007238 GO:0006269
Stsc181268g00027 460 PIRSF DNA_primase_large 1 460 IPR016558 -
Stsc181268g00027 460 CDD PriL_PriS_Eukaryotic 28 448 IPR016558 -
Stsc181268g00027 460 MobiDBLite consensus disorder prediction 1 23 - -
Stsc181268g00027 460 FunFam DNA primase large subunit 6 253 - -
Stsc181268g00027 460 Gene3D - 1 253 - -
Stsc181268g00027 460 Pfam Eukaryotic and archaeal DNA primase, large subunit 180 445 IPR007238 GO:0006269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181268g00027 Stsc-Chr181268 202607 207733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181268g00027 1 455 Core DNA Replication Machinery Family AT1G67320 65.644 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181268g00027 K02685 - gmx:100816023 770