Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181268g00019 ATGTGGGTGAAATGGTGGTGGGAGAAGATCTCTGGGAATGGATCCATGAAAGTGAAGAGTGGTTGTGTGAGAAGGGTTTTCTATTCATGGATTGTGTTTTGTACGGTGGGAGGTTTGTACGGATTCTGGCATATGAGCTTAAATGCTTGTGAGCAGAGGAAAGAAACTCTAATAAGCATGTGTGATGAAAGAGCAAGGATGGTGCAGGATCAGTTCAATGTGAGCATGAACCATATACAAGCCATGTCCATCTTGATTAAAACCTTCCACCATAACATGAACCCTTCCAGCATAGATCAGACCACTTTTTCCAGATACACTGAAAGAACTGCCTTTGAGAGGCCCCTCACAAGTGGTGTTGCATATGCTGTGAGGGTGCTTCATTCCGAAAGGGAGCAGTTTGAGAGGCAACAAGGGTGGACTATTAAGAATATGGATACTCTGCATCCATCACCTGTTCAAGATGAATATGCTCCTGTCATCTTTGCACAAGATACAATCTCACATGTCATTTCTCTTGATGTTCTATCTGGAAAGGAAGACCGTGAGAATGTGCTCCGTGCAAGGGAGTCAGGCAAAGGAGTCTTAACTGCACCCTTTAGGCTTCTCAAAACGAATCGCCTCGGGGTGATTCTCACATTTGCTGTATACAAGAGAAGTCTTCCATCAAATGCAACCCCGGATCAAAGGATTCAAGCAACTGATGGATATCTGGGTGGAGTTTTTGATGTTGAGTCATTAGTGGAGAAACTACTGCAACAACTTGCTAGCGAGCAAGCTGTGATTGTAAATGTGTATGATACTACTAACAATACACATCCAATTATCATGTACGGTTCAAATGTATCAGGGGACTCTTTCAGTTATGTCAGCACCCTTAACTTTGGAGATCCTCTCAGGAAGCATGAGATGCACTGCAGGTTCAAACGAAGACCGCCATGGCCATGGTTGGCATTCAATACTTGTGTAGGGGGGTTTGTTATTTGTGTTCTTCTTGGCTATATTTTCTATGCCACTTGGAATCGAGTTGTGAAAGCAGAAGAGGATCGCGATGAGATGACTGAGCTTAAAAAGCAAGCTGAGGCTGCTGATATTGCAAAATCACAGTTTCTTGCTACTGTGTCCCACGAGATTAGAACACCAATGAATGGGGTTTTAGGGATGCTGCATATGCTTATGGACACGGATCTAGACGTGACCCAACAGGAGTATGTGAGAACCGCACAGGGGAGTGGAAAAGCTTTGGTGTCACTTATAAATGAGGTATTGGATCAGGCTAAGATTGAAGCTGGTAAGCTGGAGCTTGAAGCTTCCCTCTTTGACTTGCGTGCTCTTTTGGATGATGTATTATCATTGTTTTCAGAAAAGTCTCAAGCAAAAGGAATAGAGTTGGCAGTTTATGTATCAGATAAGGTTCCTGAGGTGTTAATAGGTGATCCAGGAAGGTTTCGACAAATTATTACCAATCTCATGGGTAATTCAATTAAGTTCACAGAGAAAGGGCACATCTATGTGACAATCCATGTTGTTGAGGAGGTGGTCCATTCAATAGAAATTGACAAAGAATTAGGCATGGAAGATAGTAGTAATAGGGTGAGTTTGAGTGGTTTCCCTGTTGCTGATAGCCGCCGAAGCTGGGAAGGCTTCAGGGCATTCAGTCAAGTAGGGCCTCTTGGTTCTTTCTCATCTGATGCTGATCTAATCAATTTGATTGTATCTGTTGAGGACACTGGAGAAGGGATCCCTCTGGAAGCGCAGTCTCGAATCTTCACCCCGTTCATGCAGGTTGGTCCTTCAGTTTCTAGGAGACATGGGGGAACAGGTATTGGACTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGCGAAATTGGATTTGTCAGCGTGCCTAAGATTGGATCCACCTTCACTTTCACTGCTCTCTTCACCAATGCCTGCAACAACCACCACCAACACCAATCTAATCCTCCATCTTCAGAATTTCAGGGAATGAGAGCTTTACTCATTGATCCAAGACCGGTTAGAGCCAAAGTGTGTAGATATCATATGCAGAGGCTCGGCATTCGTATCAAAGTGGTTTCAGATTTAAGCCAAGGTTTGTCCACCATAACAGAAGAAGGCAATCAGATAATCAATATGGTACTTATTGAGCAGCAAGTGTGGGATAGAGATTCATGCATGTCATCTGGCTTTGTGGACAGCACCAGTAGAGTTCATCATGGAGTTCCTCCAAAGTTGTTCATTCTTGTTAATTCGAATGCTTGTTTGGGAGAAAGTATTGGTAATCCTAGGGTGATCATAAAACCTCTGAGAGCAAGTATGCTTGCTGCGTCACTGCAACGAGCCATGGGTGTTACTTGCCGAAACGGGGAGGTCCCTGCTACTAGTTTATCTCTTGGTCACCTTCTTGGAGGGAGGAAAATTCTAATTGTAGATGACAATGGTGTGAACCGCACCGTAGCAGCTGGTGCTTTGAAGAAGTATGGAGCAGATGTGGTGTGTGTTAGCAGCGGAAAAGAAGCCATCTCTAAACTGAAACCACCCCATGACTTCGATGCATGCTTCATGGATATTCAAATGCCAGAAATGGACGGTTTTGAAGCTACAAAGAAAATCCGGGAGATGGAACGTTGTGCTAGGTCCAATAAGAGAGAAGGTTTTGTAGATAAGTTATCAAAGTGGGATGTCCCTATTTTGGCAATGACTGCAGATGTGATCCAGGCTACCCATGAGGAGTGTGTAAGGCGTGGTATGGATGGATATGTTTCTAAACCCTTTGAAGCCGAACAGCTTTATAGAGAAGTCTCTAGATTCTTCCACTCATGA 2829 0.439 MWVKWWWEKISGNGSMKVKSGCVRRVFYSWIVFCTVGGLYGFWHMSLNACEQRKETLISMCDERARMVQDQFNVSMNHIQAMSILIKTFHHNMNPSSIDQTTFSRYTERTAFERPLTSGVAYAVRVLHSEREQFERQQGWTIKNMDTLHPSPVQDEYAPVIFAQDTISHVISLDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRSLPSNATPDQRIQATDGYLGGVFDVESLVEKLLQQLASEQAVIVNVYDTTNNTHPIIMYGSNVSGDSFSYVSTLNFGDPLRKHEMHCRFKRRPPWPWLAFNTCVGGFVICVLLGYIFYATWNRVVKAEEDRDEMTELKKQAEAADIAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQGSGKALVSLINEVLDQAKIEAGKLELEASLFDLRALLDDVLSLFSEKSQAKGIELAVYVSDKVPEVLIGDPGRFRQIITNLMGNSIKFTEKGHIYVTIHVVEEVVHSIEIDKELGMEDSSNRVSLSGFPVADSRRSWEGFRAFSQVGPLGSFSSDADLINLIVSVEDTGEGIPLEAQSRIFTPFMQVGPSVSRRHGGTGIGLSISKCLVGLMNGEIGFVSVPKIGSTFTFTALFTNACNNHHQHQSNPPSSEFQGMRALLIDPRPVRAKVCRYHMQRLGIRIKVVSDLSQGLSTITEEGNQIINMVLIEQQVWDRDSCMSSGFVDSTSRVHHGVPPKLFILVNSNACLGESIGNPRVIIKPLRASMLAASLQRAMGVTCRNGEVPATSLSLGHLLGGRKILIVDDNGVNRTVAAGALKKYGADVVCVSSGKEAISKLKPPHDFDACFMDIQMPEMDGFEATKKIREMERCARSNKREGFVDKLSKWDVPILAMTADVIQATHEECVRRGMDGYVSKPFEAEQLYREVSRFFHS 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181268g00019 942 Gene3D - 45 97 - -
Stsc181268g00019 942 ProSiteProfiles Histidine kinase domain profile. 373 645 IPR005467 -
Stsc181268g00019 942 FunFam Histidine kinase 4 98 312 - -
Stsc181268g00019 942 Pfam His Kinase A (phospho-acceptor) domain 366 431 IPR003661 GO:0000155|GO:0007165
Stsc181268g00019 942 CDD PRTases_typeI 759 836 IPR000836 -
Stsc181268g00019 942 SMART HisKA_10 366 431 IPR003661 GO:0000155|GO:0007165
Stsc181268g00019 942 PANTHER TWO-COMPONENT HISTIDINE KINASE 49 933 - -
Stsc181268g00019 942 ProSiteProfiles CHASE domain profile. 94 305 IPR006189 -
Stsc181268g00019 942 ProSiteProfiles Response regulatory domain profile. 808 940 IPR001789 GO:0000160
Stsc181268g00019 942 FunFam Histidine kinase 4 338 429 - -
Stsc181268g00019 942 Gene3D - 430 646 IPR036890 -
Stsc181268g00019 942 SMART HKATPase_4 478 645 IPR003594 -
Stsc181268g00019 942 Pfam CHASE domain 97 278 IPR006189 -
Stsc181268g00019 942 SUPERFAMILY CheY-like 805 939 IPR011006 -
Stsc181268g00019 942 CDD REC_hyHK_CKI1_RcsC-like 809 936 - -
Stsc181268g00019 942 CDD HisKA 366 427 IPR003661 GO:0000155|GO:0007165
Stsc181268g00019 942 Gene3D - 339 429 - -
Stsc181268g00019 942 Gene3D CHASE domain 98 312 IPR042240 -
Stsc181268g00019 942 CDD HATPase_EvgS-ArcB-TorS-like 483 643 - -
Stsc181268g00019 942 Pfam Response regulator receiver domain 809 935 IPR001789 GO:0000160
Stsc181268g00019 942 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 420 640 IPR036890 -
Stsc181268g00019 942 Coils Coil 343 366 - -
Stsc181268g00019 942 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 478 643 IPR003594 -
Stsc181268g00019 942 Gene3D - 803 942 - -
Stsc181268g00019 942 PRINTS Bacterial sensor protein C-terminal signature 588 598 IPR004358 GO:0016310|GO:0016772
Stsc181268g00019 942 PRINTS Bacterial sensor protein C-terminal signature 570 584 IPR004358 GO:0016310|GO:0016772
Stsc181268g00019 942 PRINTS Bacterial sensor protein C-terminal signature 605 623 IPR004358 GO:0016310|GO:0016772
Stsc181268g00019 942 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 353 432 IPR036097 GO:0000155|GO:0007165
Stsc181268g00019 942 SMART REC_2 807 936 IPR001789 GO:0000160
Stsc181268g00019 942 SUPERFAMILY CheY-like 661 785 IPR011006 -
Stsc181268g00019 942 SMART CHASE_2 94 280 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181268g00019 Stsc-Chr181268 138026 141964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181268g00019 5 942 Miscellaneous Gene Families AT1G27320 65.341 0.0 1248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc181268g00019 CHASE 1.9e-38 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181268g00019 K14489 - gmx:100801546 1380.54