Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181268g00016 ATGGAGTGGAATGCAAAATCTCCCTCACAGTGGGAGTGGGAGCACCTCTTCTTCTCCAATGCAAAAGTATCAGAAAACCCCAAATTACAACCGCCAACAGATTGGAGTGATGAAGCAAATGGAGAAATCAATGTTGGGTTGTTGGACAATTCTGGTGGTAGCGGTTGCTCTGAGTCTGAGCTCATGCACACATCCTCGTCAAGAAGCTCAAAATCTGCTTCCATCAATTCATCTTCCAATAAGGATAGTAAAACATCTATGTTGACCTTTGAAAGTTCCCAAGATGATTCCAGTGGTAAAAAAGAATTGTTTAAAGAAGAGCCAGTTGAAAATTCTCATTCTCTTGAGCCCCCTTCTGGCTCTGGCGAACCATTGCTTACTCTAAAGCTTGGTAAACGCATGTACTTCGAGGATGTTTGTCCAGGAAGTGGTGCCAAGAAGAACCAATCTTCCTCAGGGGCTCCGATTCCAGCTGTGAGTAGTGGAAAGAAATCAAAGTCCAATGGTCAGAACATGCAAAATCAGTGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTCTCTTCTGCTAAAGATTACCATCGCAAGCATAGAGTTTGTGAAAGCCATTCCAAATCTCCAAAGGTGGTTATTGCTGGTTTGGAACGTCGTTTTTGCCAGCAATGTAGCAGGTTCCATGGGCTGTTAGAGTTTGACGAAAACAAAAGAAGCTGCAGAAGGCGTCTTTCAGATCACAATGCACGGCGCCGGAAACCTCATCCTGAGACTGTCCAATTAAATCCATCAGCTTTTACTTCGTCATCTTTTGAAGTTGGTAGACAACAGATTAGCCCCTTCACTTACACAATGAATGGAGCTACGAACACAGCCTGGCCAGACATACGGCAGAGCAAGCAGCTCCCCCAGACGAAAGATTTTCTGCTGAATGCTGTGAAAGTCAACAATGAGATACCAAGTTTTATGAGCATGGTCGCAGAGGACTCCAAAGGTGTAGAGGATTCCACTAAGTGCTCTGATCCGCCAAACCATACTCAAGATATCCACCGTGCTCTCTCTCTTCTGTCAACCGACTCGCACTCTCAGTCTCAACCTCAGCCTCAGCGTTTGCCTCTTGCTTCCTCCGAATATTGGCACAGTGATCAGCAACCATTGAGTTCCACCATGTGGCTCACCTACCCAACTTGCGACGACACCAACCGCTTCCAGGAATTTCAGCTCTTACGAGAATCTTATGATTCTGCTTTTCCTTATGACCACTTGGATTGA 1263 0.4576 MEWNAKSPSQWEWEHLFFSNAKVSENPKLQPPTDWSDEANGEINVGLLDNSGGSGCSESELMHTSSSRSSKSASINSSSNKDSKTSMLTFESSQDDSSGKKELFKEEPVENSHSLEPPSGSGEPLLTLKLGKRMYFEDVCPGSGAKKNQSSSGAPIPAVSSGKKSKSNGQNMQNQCCQVEGCGLDLSSAKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHGLLEFDENKRSCRRRLSDHNARRRKPHPETVQLNPSAFTSSSFEVGRQQISPFTYTMNGATNTAWPDIRQSKQLPQTKDFLLNAVKVNNEIPSFMSMVAEDSKGVEDSTKCSDPPNHTQDIHRALSLLSTDSHSQSQPQPQRLPLASSEYWHSDQQPLSSTMWLTYPTCDDTNRFQEFQLLRESYDSAFPYDHLD 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181268g00016 420 MobiDBLite consensus disorder prediction 242 268 - -
Stsc181268g00016 420 Gene3D - 167 238 IPR036893 GO:0003677|GO:0005634
Stsc181268g00016 420 MobiDBLite consensus disorder prediction 50 94 - -
Stsc181268g00016 420 FunFam Squamosa promoter-binding-like protein 14 168 238 - -
Stsc181268g00016 420 MobiDBLite consensus disorder prediction 95 112 - -
Stsc181268g00016 420 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 62 385 IPR044817 GO:0003677
Stsc181268g00016 420 MobiDBLite consensus disorder prediction 144 170 - -
Stsc181268g00016 420 MobiDBLite consensus disorder prediction 142 170 - -
Stsc181268g00016 420 SUPERFAMILY SBT domain 176 256 IPR036893 GO:0003677|GO:0005634
Stsc181268g00016 420 Pfam SBP domain 177 250 IPR004333 GO:0003677
Stsc181268g00016 420 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
Stsc181268g00016 420 MobiDBLite consensus disorder prediction 23 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181268g00016 Stsc-Chr181268 111615 114576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181268g00016 1 373 SBP-box Gene Family AT1G27360 39.259 3.67e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc181268g00016 SBP 3.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181268g00016 - - ahf:112792599 656.751