Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181268g00015 ATGGAGTGGAATGCAAAATCTCCCTCACAGTGGGAGTGGGAGCACCTCTTCTTCTCCAATGCAAAAGTATCAGAAAACCCCAAATTACAACCGCCAACAGATTGGAGTGATGAAGCAAATGGAGAAATCAATGTTGGGTTGTTGGACAATTCTGGTGGTAGCGGTTGCTCTGAGTCTGAGCTCATGCACACATCCTCGTCAAGAAGCTCAAAATCTGCTTCCATCAATTCATCTTCCAATAAGGATAGTAAAACATCTATGTTGACCTTTGAAAGTTCCCAAGATGATTCCAGTGGTAAAAAAGAATTGTTTAAAGAAGAGCCAGTTGAAAATTCTCATTCTCTTGAGCCCCCTTCTGGCTCTGGCGAACCATTGCTTACTCTAAAGCTTGGTAAACGCATGTACTTCGAGGATGTTTGTCCAGGAAGTGGTGCCAAGAAGAACCAATCTTCCTCAGGGGCTCCGATTCCAGCTGTGAGTAGTGGAAAGAAATCAAAGTCCAATGGTCAGAACATGCAAAATCAGTGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTCTCTTCTGCTAAAGATTACCATCGCAAGCATAGAGTTTGTGAAAGCCATTCCAAATCTCCAAAGGTGGTTATTGCTGGTTTGGAACGTCGTTTTTGCCAGCAATGTAGCAGGTTCCATGGGCTGTTAGAGTTTGACGAAAACAAAAGAAGCTGCAGAAGGCGTCTTTCAGATCACAATGCACGGCGCCGGAAACCTCATCCTGAGACTGTCCAATTAAATCCATCAGCTTTTACTTCGTCATCTTTTGTTGGTAGACAACAGATTAGCCCCTTCACTTACACAATGAATGGAGCTACGAACACAGCCTGGCCAGACATACGGCAGAGCAAGCAGCTCCCCCAGACGAAAGATTTTCTGCTGAATGCTGTGAAAGTCAACAATGAGATACCAAGTTTTATGAGCATGGTCGCAGAGGACTCCAAAGGCAAACAAAACAAGACTCTTTTACTTGAACAATTTATTCAAACTGTTGCTTACATGCCTCTTTATTTTCAGGTGTAG 1059 0.44 MEWNAKSPSQWEWEHLFFSNAKVSENPKLQPPTDWSDEANGEINVGLLDNSGGSGCSESELMHTSSSRSSKSASINSSSNKDSKTSMLTFESSQDDSSGKKELFKEEPVENSHSLEPPSGSGEPLLTLKLGKRMYFEDVCPGSGAKKNQSSSGAPIPAVSSGKKSKSNGQNMQNQCCQVEGCGLDLSSAKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHGLLEFDENKRSCRRRLSDHNARRRKPHPETVQLNPSAFTSSSFVGRQQISPFTYTMNGATNTAWPDIRQSKQLPQTKDFLLNAVKVNNEIPSFMSMVAEDSKGKQNKTLLLEQFIQTVAYMPLYFQV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181268g00015 352 SUPERFAMILY SBT domain 176 256 IPR036893 GO:0003677|GO:0005634
Stsc181268g00015 352 MobiDBLite consensus disorder prediction 50 94 - -
Stsc181268g00015 352 Pfam SBP domain 177 250 IPR004333 GO:0003677
Stsc181268g00015 352 MobiDBLite consensus disorder prediction 95 112 - -
Stsc181268g00015 352 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 62 264 IPR044817 GO:0003677
Stsc181268g00015 352 Gene3D - 167 238 IPR036893 GO:0003677|GO:0005634
Stsc181268g00015 352 MobiDBLite consensus disorder prediction 144 170 - -
Stsc181268g00015 352 FunFam Squamosa promoter-binding-like protein 14 168 238 - -
Stsc181268g00015 352 MobiDBLite consensus disorder prediction 142 170 - -
Stsc181268g00015 352 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
Stsc181268g00015 352 MobiDBLite consensus disorder prediction 23 125 - -
Stsc181268g00015 352 MobiDBLite consensus disorder prediction 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181268g00015 Stsc-Chr181268 111615 114908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181268g00015 1 253 SBP-box Gene Family AT5G43270 48.837 5.42e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc181268g00015 SBP 2.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181268g00015 - - ahf:112792599 539.65