Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181268g00008 ATGGTGAAGTCCAAGCCAACAACAAAATTCCCTTCCTTTCTTCTACTACTACTACTCCTAACACTACTTGCTTCCTTATTCTTATTCCAAAGCTCACTCTCTTCTTTCTCTTTCTCTTTTTCTTTCTCACTCTTCACTCTCTTCCTCTTCGCTCTTTCCCTTAACTACTGGCTTGTCCCCGGAGGCTTTGCATGGCGGAACTACCACCACAACAACAACGTAAAAATCTCTGGTCCCATAGGTTGGCCCTTGCTGGGTTCTTTGCCTCAAATGGGTTCCCTTGCACATGCAAAACTCGCTTCCATGGCTACAAACTTGAATTCAAAGAGGCTCATGGCGTTCAGTCTTGGTTCCACACCAGTTATCATAAGCAGCCACCCTGAAACCGCAAGAGAGATTCTCCTCGGATCTTCATTCGCCGATCGACCAATCAAAGCTTCAGCCAAAACCCTAATGTTCGAGCGCGCCATTGGTTTCGCCCCTTCCGGAACCTACTGGCGCCACCTCAGAAGAATAGCCGCTTTCCACATGTTCTCTCCTAAAAATATTCACAGCTTGGAGAATCTGCGGCAACGAATAGCTTCGGAGATGGCAGTGAAAGCAATGAGGATAATGGAAGAGAAAGGGTTTGTTGAAATTCGTAGTGTGTTTCAGGAAGGTTCTCTCAGCAATATTCTGGAGAGTGTGTTTGGTTCTTCTTCTTCTAGCTCTGAGTTGGGGGATATGGTGAAGGAAGGGTACGAGTTAATTGGCATGTTTAACTTGGAAGATTATTTTCCATTGTTGAAGTTGTTGGACTTTTATGGTGTCAAGAGAAGGTGTCACAAATTAGCCAGTAAAGTTAAAAGTGTGGTGGGTAACATTGTGGATCAAAGAAAAAAGTGTCCGCAACAGTTGCTTCGCAACAATAATGATTTTCTCAGCACTTTGCTTTTACTTCCTAAGGAGGAAAGCTTAGCCCATTCGGATATGGTGGCTATTCTTTGGGAAATGATATTTAGAGGAACAGATACAGTGGCAATATTACTGGAGTGGATCATGGCTAGGATTGTACTGCACCAGGACGTACAAATGAAAGTCCGCCAAGAGATTGACACGTGTGTTGGCCAAAACGGTCATGTGCGAGACTCCGACATTCCCAACCTCCCTTACCTTCAGGCCATAATCAAAGAGGTACTCCGCTTACACCCGCCCGGCCCATTGCTATCATGGGCCCGCTTAGCTGTCCATGATGTCCACGTGGATAAAGTCTTTGTGCCAGCTGGCACAACCGCAATGGTTAACATGTGGGCTATATCACATGACTCATCCATATGGGACGACCCATGGGCTTTCAAGCCCGAACGGTTCTTGAAGGGAAATGTATCCATTATGGGCTCGGACTTGAGGCTGGCACCATTCGGCGCAGGGCGTAGGGTGTGCCCAGGGAGAGCATTGGGCTTAGCCACTGTCCATATCTGGCTTGCACGGCTTCTCCACCATTTCGTGTGGCTTCCCGCGGCACAACCTGTTGATCTCTCCGAAAATCTCAGGCTTTCTATGGAGATGAAGACACCCTTACGTTGCCGAGTAGTTCATAGACATAACTACGTAAGCCCTTAA 1602 0.4694 MVKSKPTTKFPSFLLLLLLLTLLASLFLFQSSLSSFSFSFSFSLFTLFLFALSLNYWLVPGGFAWRNYHHNNNVKISGPIGWPLLGSLPQMGSLAHAKLASMATNLNSKRLMAFSLGSTPVIISSHPETAREILLGSSFADRPIKASAKTLMFERAIGFAPSGTYWRHLRRIAAFHMFSPKNIHSLENLRQRIASEMAVKAMRIMEEKGFVEIRSVFQEGSLSNILESVFGSSSSSSELGDMVKEGYELIGMFNLEDYFPLLKLLDFYGVKRRCHKLASKVKSVVGNIVDQRKKCPQQLLRNNNDFLSTLLLLPKEESLAHSDMVAILWEMIFRGTDTVAILLEWIMARIVLHQDVQMKVRQEIDTCVGQNGHVRDSDIPNLPYLQAIIKEVLRLHPPGPLLSWARLAVHDVHVDKVFVPAGTTAMVNMWAISHDSSIWDDPWAFKPERFLKGNVSIMGSDLRLAPFGAGRRVCPGRALGLATVHIWLARLLHHFVWLPAAQPVDLSENLRLSMEMKTPLRCRVVHRHNYVSP 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181268g00008 533 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 467 476 IPR017972 GO:0005506|GO:0016705
Stsc181268g00008 533 PANTHER CYTOCHROME P450 78A7-RELATED 28 527 - -
Stsc181268g00008 533 PRINTS P450 superfamily signature 465 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181268g00008 533 PRINTS P450 superfamily signature 387 398 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181268g00008 533 PRINTS P450 superfamily signature 474 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181268g00008 533 PRINTS P450 superfamily signature 334 351 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181268g00008 533 SUPERFAMILY Cytochrome P450 78 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181268g00008 533 Gene3D Cytochrome P450 64 530 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181268g00008 533 PRINTS E-class P450 group I signature 474 497 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181268g00008 533 PRINTS E-class P450 group I signature 386 404 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181268g00008 533 PRINTS E-class P450 group I signature 323 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181268g00008 533 PRINTS E-class P450 group I signature 428 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181268g00008 533 PRINTS E-class P450 group I signature 343 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181268g00008 533 PRINTS E-class P450 group I signature 464 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181268g00008 533 FunFam Cytochrome P450 78A5 68 527 - -
Stsc181268g00008 533 Pfam Cytochrome P450 78 508 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181268g00008 Stsc-Chr181268 55261 57527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181268g00008 38 528 Cytochrome P450 AT1G13710 51.866 1.10e-178 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181268g00008 - - gmx:100817944 755.747