Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181266g00018 ATGGCCCTTAAGGTCACCATGGAGCAAGCCATTAGAGCCCACAAGCTAGTGTCAACCATGGAATCAAACAACTTGTTCAAAGACAATAAAAAAGCCAAGATGGCTTGGGAAGATTGTTTGGAGCTCTATGAGGACACCATTTATCAGCTCAACCGTTCCATCACCACCAAAAACCTAAACGACAGGTTGACATGGCAAAGTGCTTCCATTGCAAACCACCAAACATGCCAAAACGGTTTCATTGACTTCAACCTCAACTCTCACCTAAACTATTTCCCATCAGTGATGTCCAACTTCTCCAAACTGCTCAGCAACTCCTTGTCCATCACCAAGGCTGTCTCCATGTTAGAAGCAAACCAAGAACTCAGAGGAAGAAGGAGGCTATTGCTTTCGTCCTCGTCATCACATGGTTTCCCTGAATGGTTATCGGTTTCGGATAGGAGGCTCCTTCAGGCGGCCACACCACCAAAGGCTGACGTGTTGGTGGCGCAAGACGGGAGCGGGAGCTACAAGACGATAACGGAAGGAGTGGCCGCGGCGGCTAGGATTGGCGGAGGAAGGAGGGTTGTTGTGCACGTGAAAGCAGGTGTTTACAGAGAGAATGTTGTTATCAAGAAAACAGTGAAGAACATAATGATTGTGGGAGATGGAATTGACGCTACGGTTGTGACCGGAAACGGCAACGCACAAGATGGATCCACCACTTTCCGATCAGCTACTTTTGGGGCGGCGGCTCATCTCTATATATCCATCATGACTGGAAAGGGACAAGGACACTCCGACCACTCCGTCTTCTACCGCTGCAGCTTCAAAGGCTACCAAGACACCTTATACGTCTACGCCCAGCGCCAATTCTACCGGGACTGCGATGTCTACGGCACCGTCGACTTCATCTTCGGCGACGCGGTCTCCGTCCTACAGAACTGCAACATCTACGTCCGAAGACCCATGAGCAACCAGCAGAACACCGTGACCGCCCAAGGGAGAACCGATCCCAACGAGAACACCGGCATCATCATCCACAACTGTCGGATAACTGCCGCCGGGGACATGGGCTCCGTCAAGACCTTCCTTGGCCGTCCATGGCAGAAGTACTCCAGAACGGTGGTCATGAAGAGCGGGCTTGGTGGGTTGATTAACCCCGCCGGTTGGGCTCCTTGGAGTGGAAGCTTTGCTCTGAGCACACTCTATTACGGTGAGTACATGAACACCGGTCCCGGTGCTAACACGGCCGGTAGGGTTCACTGGCCTGGGTTTCATGTTATTAGAGATCCCTCTGAAGCTGTCAAATTTTCTGTTGGTGATTTCTTGGCTGGTGGATCATGGATTCCTGGTAGTGGTGTGCCCTTTGATGCAGGTTTGTGA 1365 0.5143 MALKVTMEQAIRAHKLVSTMESNNLFKDNKKAKMAWEDCLELYEDTIYQLNRSITTKNLNDRLTWQSASIANHQTCQNGFIDFNLNSHLNYFPSVMSNFSKLLSNSLSITKAVSMLEANQELRGRRRLLLSSSSSHGFPEWLSVSDRRLLQAATPPKADVLVAQDGSGSYKTITEGVAAAARIGGGRRVVVHVKAGVYRENVVIKKTVKNIMIVGDGIDATVVTGNGNAQDGSTTFRSATFGAAAHLYISIMTGKGQGHSDHSVFYRCSFKGYQDTLYVYAQRQFYRDCDVYGTVDFIFGDAVSVLQNCNIYVRRPMSNQQNTVTAQGRTDPNENTGIIIHNCRITAAGDMGSVKTFLGRPWQKYSRTVVMKSGLGGLINPAGWAPWSGSFALSTLYYGEYMNTGPGANTAGRVHWPGFHVIRDPSEAVKFSVGDFLAGGSWIPGSGVPFDAGL 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181266g00018 454 SMART PMEI_2 1 109 IPR006501 GO:0004857
Stsc181266g00018 454 Pfam Pectinesterase 159 439 IPR000070 GO:0030599|GO:0042545
Stsc181266g00018 454 NCBIfam pectinesterase inhibitor domain 10 112 IPR006501 GO:0004857
Stsc181266g00018 454 Gene3D - 157 454 IPR012334 -
Stsc181266g00018 454 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1 112 IPR035513 -
Stsc181266g00018 454 SUPERFAMILY Pectin lyase-like 153 453 IPR011050 -
Stsc181266g00018 454 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 113 IPR035513 -
Stsc181266g00018 454 PANTHER PECTINESTERASE 1 444 - -
Stsc181266g00018 454 CDD PMEI-like_3 1 114 - -
Stsc181266g00018 454 ProSitePatterns Pectinesterase signature 2. 291 300 IPR033131 -
Stsc181266g00018 454 ProSitePatterns Pectinesterase signature 1. 185 204 IPR018040 -
Stsc181266g00018 454 Pfam Plant invertase/pectin methylesterase inhibitor 1 109 IPR006501 GO:0004857
Stsc181266g00018 454 FunFam Pectinesterase 4 156 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181266g00018 Stsc-Chr181266 139762 142205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181266g00018 1 454 Carbohydrate Esterase AT1G23200 50.101 1.75e-162 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181266g00018 - - gmx:100816802 638.262