Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181266g00017 ATGACTAACAACACCGCCATTATTCTTGTTTTCATCTTCTTCTTTGCAAATCTGCAACACTCCTTCTCTCAAAACACTGATGACACTACCTCATACTCCATTTGCAGCAAACCATTCAGCTGTGGAACACTCATCACCAACGTATCTTACCCTTTCTGGGGAGGAAACAGACCCCACTTCTGTGGAACCCATGGTTTCAAACTCACCTGCACCAACAACAACAACAATCAAACCACTGCTTCACTTCAACTTGGTCTGCAAAACTTCCATGTGCTTGCTATCAACCAAACTCAGAGTACCATGAGAATTGTGAGAACAGACTTTGTCTATGATCAATGTTCTTCCAATCATAATCATCTCACAAACACTTCCCTCAACGGAAGTCCCTTCACCTTTCTCCCAAACACCCTTCAAAATATCACCATATTCTATGATTGTCCATCTGGGAATCCTTCACTTGTGGGAAAAACTAACACTTTTACGTGCCAGAATGATAGCAGAAAACACGGTTTCTATGCTGTCAATGCAACTCAGACTCAGCAGTTCAGGAACTGTGGGGTTAGTGTTCAAGTGCAAGTTTCAAGGGACAATAATGTTTCTGGGAATAATAATCTGAAGAAAGCTCTGGATGAAGGGTTTGATGTGCAGTATGATGCAGATTTGTCTTCAAAGTGCAAAACATGCATTGAATCTGGAGGAGTATGTGGCACCAACCACACAAATTCCTCTGATGAGTTTTCATGTTATTGCCCCACTGGAACAACAAATGCTTCTTCTGTCTGCTCTTCTCATAATAAAAGTAGTAAGAAGCACAAAGTCTTGAAGCTAGTATTAGGTTTCCTAGGTACTGGAATTGGACTACCTCTGATTGCTGTGATCATATGCCGTAACAAAGCTAAGGTGTGGAAGTTCATCAAGAATCAATTGGGGTTGATGAACAAGCATGATCGAAATCTAGAAGCCTTTCTAGAAAGCCAAGGTCCTCTTGGTATAAAGAGATATAGTTTCTCTGATGTGAAGAAAATGACCAACTCCTTCAAACTCAAACTCGGAGAAGGAGGCTATGGTTCTGTTTACAAGGGAAAACTACCCAATAATGGTTCCTCTGTAGCTGTCAAGATTCTGAATGATTCCAAAGGTAATAATGGTGAAGAATTCGTCAACGAAGTTGCCAGCATTAGCAAAACATCCCATGTTAATGTTGTCACTCTGGTTGGATTCTGCCTCGAAGGAAGGCGAAAAGCTCTCGTCTATGAATTCATGCCTAATGGTTCTCTCGAAAAGTTTATTCACAAAAAGAAAGATGAGAGCACTCCATCCCTAAGTTGGGACAAGCTGTACCAGATTGCAATAGGGATAGCTAAAGGATTGGAGTACTTGCACAAAGGATGCAACACTAAGATTGTACATTTCGACATTAAGCCTCATAATATTCTCCTGGATGAGAATTATCGTCCAAAGATATCGGATTTTGGACTAGCTAAGCTCGGCGAGAAGGATGAGAGCATTATGTCAATGTCATATGCTAGAGGGACTGTTGGATATGTTGCTCCGGAAATGTGCAACAAGAGTTTAGGAGGCGTGTCTCACAAATCTGATGTGTATAGTTACGGAATGATGCTGTTGGAAATCGTTGGAGGACACAAGAATGCGAATGTTGAAGCGAGTTGTTCGAGCGAGATTTACTTTCCACAATTGGTGGTTTACAAGAAGCTTGAACTTGGGAGTGATTTGGGACTTGATGGGGTGATGAGTAGAGAAGAAAATGAATTGGCAAAGAAAATGACTATGGTGGGTTTGTGGTGCATTCAGACAATTCCTTCTCAAAGACCAACCATTAGCAGAGTGATTGACATGTTGGAAGGTAGCATGGATTCTATGGAAATGCCACCGAAACCAACATTGTCATCTCCTCCAAGATCCACAACAGACTTTTCCACTGCATCATTGTCAGGGGATAGTGTCTGA 1968 0.4151 MTNNTAIILVFIFFFANLQHSFSQNTDDTTSYSICSKPFSCGTLITNVSYPFWGGNRPHFCGTHGFKLTCTNNNNNQTTASLQLGLQNFHVLAINQTQSTMRIVRTDFVYDQCSSNHNHLTNTSLNGSPFTFLPNTLQNITIFYDCPSGNPSLVGKTNTFTCQNDSRKHGFYAVNATQTQQFRNCGVSVQVQVSRDNNVSGNNNLKKALDEGFDVQYDADLSSKCKTCIESGGVCGTNHTNSSDEFSCYCPTGTTNASSVCSSHNKSSKKHKVLKLVLGFLGTGIGLPLIAVIICRNKAKVWKFIKNQLGLMNKHDRNLEAFLESQGPLGIKRYSFSDVKKMTNSFKLKLGEGGYGSVYKGKLPNNGSSVAVKILNDSKGNNGEEFVNEVASISKTSHVNVVTLVGFCLEGRRKALVYEFMPNGSLEKFIHKKKDESTPSLSWDKLYQIAIGIAKGLEYLHKGCNTKIVHFDIKPHNILLDENYRPKISDFGLAKLGEKDESIMSMSYARGTVGYVAPEMCNKSLGGVSHKSDVYSYGMMLLEIVGGHKNANVEASCSSEIYFPQLVVYKKLELGSDLGLDGVMSREENELAKKMTMVGLWCIQTIPSQRPTISRVIDMLEGSMDSMEMPPKPTLSSPPRSTTDFSTASLSGDSV 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181266g00017 655 Pfam Wall-associated receptor kinase galacturonan-binding 35 105 IPR025287 GO:0030247
Stsc181266g00017 655 FunFam PR5-like receptor kinase 421 632 - -
Stsc181266g00017 655 MobiDBLite consensus disorder prediction 624 655 - -
Stsc181266g00017 655 MobiDBLite consensus disorder prediction 638 655 - -
Stsc181266g00017 655 SMART serkin_6 344 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181266g00017 655 ProSiteProfiles Protein kinase domain profile. 344 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181266g00017 655 PANTHER RUST RESISTANCE KINASE LR10-RELATED 314 637 IPR045874 GO:0004672
Stsc181266g00017 655 Pfam Protein tyrosine and serine/threonine kinase 347 619 IPR001245 GO:0004672|GO:0006468
Stsc181266g00017 655 Gene3D Transferase(Phosphotransferase) domain 1 421 632 - -
Stsc181266g00017 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Stsc181266g00017 655 Pfam Wall-associated receptor kinase C-terminal 171 252 IPR032872 -
Stsc181266g00017 655 SUPERFAMILY Protein kinase-like (PK-like) 331 645 IPR011009 -
Stsc181266g00017 655 CDD STKc_IRAK 350 622 - -
Stsc181266g00017 655 Gene3D Phosphorylase Kinase; domain 1 321 420 - -
Stsc181266g00017 655 FunFam serine/threonine-protein kinase PBS1-like 312 420 - -
Stsc181266g00017 655 ProSitePatterns Protein kinases ATP-binding region signature. 350 373 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181266g00017 Stsc-Chr181266 130760 133962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181266g00017 35 635 Receptor kinase-like Gene Family AT5G38260 41.252 8.61e-140 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc181266g00017 PK_Tyr_Ser-Thr 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181266g00017 - - vra:106766588 861.292