Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181266g00011 ATGGCGACGCCGTTTTCGGCTGATGGAGGCGGAGGACTGGCGGTGCTCTCCAATTCCGTCGACAAGGTTGATTCCTCTTCCTCCTCCACGGCGCTCAATGGCAAGATCAAGTGCTCTAAGCTGGTGGACTCGCCAATTTTGATTTTCCTGTTCTTCCACAGGGCGATTCGGAACGAGCTAGACGCGCTGCACCGTCTCGCCATGGCATTCGCCACCGACAACTGTTCCGATATCCAGCCTCTCTCCCAGCGCTACCATTTCCTCAGCTCCATGTACAGGCACCACTCCAATGCCGAAGACGAGGTGATTTTTCCAGCTCTAGATATACGTGTGAAGAATGTTGCCAAGACATATTCTCTTGAACACAAAGGTGAAAACAATCTTTTCGATCATCTATTTGAGCTGCTAAATTCTCCCCTCCACAACGATGAAAATTTTGCTAGAGAGTTAGCATCCTGCACAGGGGCTTTGCAGACGTCAGTTACTCAGCACATGGCAAAGGAAGAGGAGCAGGTATTTCCTCTGCTTATTGAGAAGTTCTCTCTTGAGGAGCAGGCATCTTTAGTTTGGCAGTTTCTTTGCAGTATTCCCGTGAACATGATGGCTGAATTTCTTCCATGGCTTTCAAGATCAATATCACCTGATGAACCACAGGATTTGCAGAATTGCTTAATCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCAAGTGGATGGAAGGGAGAAGCAGTGTTAACTCAGTTGACAGCTATGAAAAACATTCTCAAGTTCAATGTAGTTGTAGCCCGTCAACTGGAAAACGGAAATATTCTGTATCTACCCTAGATGTCTCTGATGCCATTGGAACACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATTAAAAAAGAGCTAAGTGAGATAGCAGTGGAGACCCGAAAGATACAATGCTCTGGGGATTTTACGAATCTATCCTCTTTTAATCAAAGATTGCAATTCATTGCTGAAGAGCATGCTGAAGAAGAAAGCCAGTTTAATGACTTTCGGTGTTTGATTGAAGGTATTCAAAGTGAAGGAGCAACATCTAATTCAGAAGTTGAATTCTTTTCAAAGTTATGCTCACATGCTGATCATATAATGGAAACCATAGAGAGACATTTCCGTAATGAAGAAGTTCAGGTCCTTCCACTTGCAAGAAAGCACTTTAGCTTTAAAAGGCAACGTGAACTTCTGTATCAAAGCTTGTGCCTGATGCCTCTGAAATTGATTGAGCGTGTTCTTCCATGGTTGGTAGGATCATTAACTGCAGATGAAGCAAAGATGTTTCTGAGAAACATGCAATTGGCAGCTCCAGCAACGGATTCTGCTCTAGTTACACTCTTCTCTGGGTGGGCTTGCAAGGCTCGTGTGGAAGATTTATGTCTGTCTTCTGGTGCTTCAGGTTGCTGTCCTGTTCAAAGACTTTTCGATATTGAGGAAAACATTGCTTGGTCATCCTGTGCTTGTGCTTCTGCATCATCTGTAAGACATTGTTTAGTATTAGATAGATCAGATGGGAACAGAAAGTCAGTAAAGCGAAACGTATTAGAGTCCCACAAGAATGAAGATATCACTGAAGCTCCAGAGACTGAAAATGTCCAAAAACAATGTTGTACTACTCGGTCTTGTTGTGTGCCGGGTTTAGGAGTAAACAGTAACAATTTGGGGCTGGGGTCTGTTTCTACAGCCAAGTCCTTGCGGTCCTTATCTTTCAACTCGTCTGCCCCATCTCTTAATTCTAGTCTTTTTGTATGGGAAACAGAAAGCAGCTCATCTGATGTTGGCTCCGCACAAAGGCCAATTGATACCATATTTAGTTTCCACAAAGCTATACGAAAAGACTTGGAGTATCTGGACGTTGAATCTGGAAAGCTGAATAATGGTAATGAGATAGTTCTTCGACAATTTACTGGAAGGTTTCGTCTTTTATGGGGCTTATATAGAGCTCATAGTAATGCCGAAGATGATATAGTATTTCCAGCATTGGAGTCTAAAGAGGCACTTCATAATGTGAGTCATTCGTACATGTTGGACCATAAGCAGGAAGAGCAATTATTTGAGGATATTTCCTGTGTTCTCTCTGAGCTTTCTGTTCTCCACGAAGCCTTGCAGATGAACCATATGGTGGAGAACTTAAGTGAAAGTAGTTTTGAAACTTCTGATTCTAAGGGCAGTGAGAATATTAAAAAGTATAACAAACTCGCGACTAAGCTTCAAGGAATGTGCAAGTCCATAAGGATTACCTTGGATCATCATCTTTTCAGGGAGGAGTGTGAACTGTGGCCATTATTTGGGAAACATTTCACTGTAGAAGAACAGGACAAGATAGTAGGCCGGATAATTGGAACAACTGGAGCCGAAGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCGCTTACTCAAGATGAACAAAACAACATGATGAACACATGGAAGCAGGCAACTAAAAACACTATGTTCAATGAATGGCTCACTGAATGCTGGAAAGATAGACCAGCACCTATACCACAGCTAGAAACATCAGATCATAACACTTCTCAAAGAGGAGCTGAATATCAAGAAAGCTTGGACCACAATGATCAAATGTTCAAGCCCGGTTGGAAAGACATATTCCGGATGAACCAGAGTGAACTGGAGTCAGAGATCCGAAAGGTTTATCGTGATTCAACTCTTGATCCAAGGAGAAAGGCATACCTTGTGCAGAATCTGATGACAAGTCGTTGGATAGCTGCTCAGCAAAAATCACCGAAAGCCCTAACTGAAGCAGCATCCAATGGTGAACAAATAGAAGGGCAATCACCATCATTTCGGAACCCTGATAAACATGATTATGGGTGTGAGCACTATAAGAGAAATTGTAAACTTCGAGCTGCATGTTGTGGCAAGTTAGTTACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGTCTGAATATACAGCCAATAGGGCCTAAATGCATGACACCTTCGTGTAATGAACTTTCAATGGCGAAATACTATTGCAGCATATGCAAATTTTTTGATGATGAAAGGAATGTATATCATTGCCCATTTTGCAACATATGCCGTGTTGGACGAGGGCTTGGGATTGATTATTTCCATTGCATGAAATGCAATTGCTGCTTGGGGATAAAATCAACATCACATAAGTGCCTGGAAAAAGGGTTAGAAATGAATTGCCCAATTTGTTGTGATGATTTATTCACGTCAAGTGCACCAGTTAGAGCTCTGCCTTGTGGGCATTATATGCATTCTGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCGATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTATTTCGGCATGCTTGACGCTTTATTGGCTACTGAAGAGCTTCCTGAAGAGTATAAGGACCGGTGTCAGGACATACTCTGCCATGACTGTGACAAAAAGGGCACTTCACGCTTCCATTGGTTATATCATAAATGTGGATTTTGTGGCTCTTACAATACCCGGGTGATTAAGGGTGAGGCATCAAATTCCAACTGCTCTTACTCTTAG 3618 0.4237 MATPFSADGGGGLAVLSNSVDKVDSSSSSTALNGKIKCSKLVDSPILIFLFFHRAIRNELDALHRLAMAFATDNCSDIQPLSQRYHFLSSMYRHHSNAEDEVIFPALDIRVKNVAKTYSLEHKGENNLFDHLFELLNSPLHNDENFARELASCTGALQTSVTQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSRSISPDEPQDLQNCLIKIVPEEKLLQKVIFKWMEGRSSVNSVDSYEKHSQVQCSCSPSTGKRKYSVSTLDVSDAIGTHPIDEILLWHNAIKKELSEIAVETRKIQCSGDFTNLSSFNQRLQFIAEEHAEEESQFNDFRCLIEGIQSEGATSNSEVEFFSKLCSHADHIMETIERHFRNEEVQVLPLARKHFSFKRQRELLYQSLCLMPLKLIERVLPWLVGSLTADEAKMFLRNMQLAAPATDSALVTLFSGWACKARVEDLCLSSGASGCCPVQRLFDIEENIAWSSCACASASSVRHCLVLDRSDGNRKSVKRNVLESHKNEDITEAPETENVQKQCCTTRSCCVPGLGVNSNNLGLGSVSTAKSLRSLSFNSSAPSLNSSLFVWETESSSSDVGSAQRPIDTIFSFHKAIRKDLEYLDVESGKLNNGNEIVLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSELSVLHEALQMNHMVENLSESSFETSDSKGSENIKKYNKLATKLQGMCKSIRITLDHHLFREECELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNNMMNTWKQATKNTMFNEWLTECWKDRPAPIPQLETSDHNTSQRGAEYQESLDHNDQMFKPGWKDIFRMNQSELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKSPKALTEAASNGEQIEGQSPSFRNPDKHDYGCEHYKRNCKLRAACCGKLVTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPIGPKCMTPSCNELSMAKYYCSICKFFDDERNVYHCPFCNICRVGRGLGIDYFHCMKCNCCLGIKSTSHKCLEKGLEMNCPICCDDLFTSSAPVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLATEELPEEYKDRCQDILCHDCDKKGTSRFHWLYHKCGFCGSYNTRVIKGEASNSNCSYS 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181266g00011 1205 SUPERFAMILY RING/U-box 1085 1132 - -
Stsc181266g00011 1205 Pfam Hemerythrin HHE cation binding domain 50 176 IPR012312 -
Stsc181266g00011 1205 CDD Hr-like 613 773 - -
Stsc181266g00011 1205 Gene3D nmb1532 protein domain like 43 194 - -
Stsc181266g00011 1205 Pfam Zinc-ribbon 1134 1191 IPR039512 -
Stsc181266g00011 1205 Gene3D nmb1532 protein domain like 321 411 - -
Stsc181266g00011 1205 Gene3D nmb1532 protein domain like 607 838 - -
Stsc181266g00011 1205 ProSiteProfiles Zinc finger CTCHY-type profile. 1023 1086 IPR017921 -
Stsc181266g00011 1205 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 654 1199 - -
Stsc181266g00011 1205 Pfam CHY zinc finger 958 1033 IPR008913 GO:0008270
Stsc181266g00011 1205 SUPERFAMILY Zinc hairpin stack 1024 1080 IPR037275 -
Stsc181266g00011 1205 FunFam Zinc finger protein-related isoform 1 1082 1131 - -
Stsc181266g00011 1205 CDD RING-H2_Pirh2-like 1086 1129 - -
Stsc181266g00011 1205 Pfam Ring finger domain 1086 1128 IPR001841 -
Stsc181266g00011 1205 SMART ring_2 1087 1128 IPR001841 -
Stsc181266g00011 1205 CDD Hr-like 48 174 - -
Stsc181266g00011 1205 Gene3D - 1158 1200 - -
Stsc181266g00011 1205 ProSiteProfiles Zinc finger CHY-type profile. 951 1020 IPR008913 GO:0008270
Stsc181266g00011 1205 ProSiteProfiles Zinc finger RING-type profile. 1087 1129 IPR001841 -
Stsc181266g00011 1205 SUPERFAMILY CHY zinc finger-like 953 1014 IPR037274 GO:0008270
Stsc181266g00011 1205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1082 1131 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181266g00011 Stsc-Chr181266 86407 93811 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181266g00011 1 1205 C2H2 Transcription Factor Family AT3G18290 63.831 0.0 1590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181266g00011 K16276 - gmx:100803002 2055.8