Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181266g00003 ATGTCTAGTTCAAAGAGTGTTAGTAGCAGTGGTAGTAGTGAAGATGACAACAATGAAATTAGAAGAGGGCCATGGACTCTTGAAGAGGATAATCTTCTCACACAATCCATTGCTAACCATGGCCAAGGCCGATGGAATTTACTTGCTAAACGTTCAGGGTTAAAGAGAACAGGGAAAAGTTGCAGATTAAGATGGCTGAATTATCTAAAGCCGGATGTAAAGAGAGGAAATTTAACACCACAGGAGCAGCTTTTGATTCTTCAACTTCACTCAAAGTGGGGCAACAGGTGGTCAAAGATTGCAGAGCATTTACCAGGCAGGACAGACAATGAAATAAAGAACTACTGGAGAACCAAGATTCAGAAACAAGCAAGGCATTTGAAAATCAATACAGATAGCAGAGAGTTTCAAGAACTAGTCAGCCGTTTCTGGATTCCAAGATTGCTTCAGAAAGCAACAGAATCATCCTCTTCGTCTTCTTCTTCTTTTTCTTCTTCAGCCATGTCAATCCAAAACCAAGCAACTATACCTGTTTCTCAGTATTCACCATCACCAACAACAACAACTTGTGTAAATCAAGGACATGAGCACCTCAGCAATGGTGCATGCCAATCCTTCTCAGAACCAAAAGTACCTCAGCTTTTGGGATACCACAACTGCAACCAATTTGATGAACTTGGCACCTTCGCATATGATGAAGGGTACCATGTAAATAGCAATGCCTATGAGATTGACAACTTCAACATGGAATACTCTGTTGATGATTGCCAAGTGGCAAGACACAATTGGGTAAACAATGATTTTGCATGTGACTTGTGGAACATGGATGAATTCTGCCAATTTAGTAACTGA 852 0.4061 MSSSKSVSSSGSSEDDNNEIRRGPWTLEEDNLLTQSIANHGQGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQLLILQLHSKWGNRWSKIAEHLPGRTDNEIKNYWRTKIQKQARHLKINTDSREFQELVSRFWIPRLLQKATESSSSSSSSFSSSAMSIQNQATIPVSQYSPSPTTTTCVNQGHEHLSNGACQSFSEPKVPQLLGYHNCNQFDELGTFAYDEGYHVNSNAYEIDNFNMEYSVDDCQVARHNWVNNDFACDLWNMDEFCQFSN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181266g00003 283 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Stsc181266g00003 283 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Stsc181266g00003 283 CDD SANT 24 69 IPR001005 -
Stsc181266g00003 283 FunFam Myb transcription factor 22 74 - -
Stsc181266g00003 283 FunFam MYB transcription factor 78 120 - -
Stsc181266g00003 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Stsc181266g00003 283 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Stsc181266g00003 283 SMART sant 74 122 IPR001005 -
Stsc181266g00003 283 SMART sant 21 71 IPR001005 -
Stsc181266g00003 283 Gene3D - 22 74 - -
Stsc181266g00003 283 MobiDBLite consensus disorder prediction 1 21 - -
Stsc181266g00003 283 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Stsc181266g00003 283 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Stsc181266g00003 283 Gene3D - 78 121 - -
Stsc181266g00003 283 CDD SANT 79 118 IPR001005 -
Stsc181266g00003 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Stsc181266g00003 283 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 187 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181266g00003 Stsc-Chr181266 32434 33822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181266g00003 17 281 MYB Transcription Factor Family AT1G68320 47.586 8.38e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc181266g00003 Myb_DNA-binding 3.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181266g00003 K09422 - gmx:778045 368.622