Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181266g00001 ATGGCTGAATTCACAGAAGATTTGCATAGTTTTAGACCTTCTTTTCCTTTCTTAGATATTAACAACATGGAACTAACAAATGGATTCAAAGGGGTTAATGTGAATTCACATATGCAGGACTTTTTTATGCCTTTCACTACTAGTCACAGCTTCTTGAGTTCTCCAGAACCTGAATTTTCAGGCCTTGTCCATTATGTTAGTCACAGTAATCTTCCATCTTCACTTACCATATCTTCTTCAGAAGATAATGAAATCCAACGAGGTGAAAAGCGGAAAGCGGCGGATACGCCGGACACCATGTCAGCAAACTCAACTCCTGCAGTATCTGGGAGTGGCAGCAATACAAAAAATAATCATGGAAGAGGCAAGAGACGAAAAAAGAATGAAACAGAAGATAAGAAATCAAAGGAAGTAGTTCATGTTAGAGCTAGAAGAGGCCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGGAGAGGGAAAATCAATGAGAAACTTAAATGTTTACAGAACATTGTCCCAGGATGTTATAAGACTATGGGAATGGCAATAATGTTGGAAGAGATTATAAACTATGTTCAGTCTTTGCAGCATCAAGTGGAGTTCCTCTCTATGAAGCTTACTGCAGCAAGTGCTTTTTATGACTTCAACTCAGAGACAGATGCTTTAGAAACATTGCAGAGAGGAAGGGCATTAGAAGCAAAAGAGTTGGCGAAGAACGGCTTTCAACCAACTTGGCCTTATTGGTCCCTTTGA 759 0.3953 MAEFTEDLHSFRPSFPFLDINNMELTNGFKGVNVNSHMQDFFMPFTTSHSFLSSPEPEFSGLVHYVSHSNLPSSLTISSSEDNEIQRGEKRKAADTPDTMSANSTPAVSGSGSNTKNNHGRGKRRKKNETEDKKSKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLEEIINYVQSLQHQVEFLSMKLTAASAFYDFNSETDALETLQRGRALEAKELAKNGFQPTWPYWSL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181266g00001 252 CDD bHLH_AtBPE_like 137 222 - -
Stsc181266g00001 252 Gene3D - 147 209 IPR036638 GO:0046983
Stsc181266g00001 252 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 67 221 IPR024097 GO:0006355
Stsc181266g00001 252 MobiDBLite consensus disorder prediction 72 153 - -
Stsc181266g00001 252 MobiDBLite consensus disorder prediction 97 117 - -
Stsc181266g00001 252 Pfam Helix-loop-helix DNA-binding domain 151 198 IPR011598 GO:0046983
Stsc181266g00001 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 197 IPR011598 GO:0046983
Stsc181266g00001 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 215 IPR036638 GO:0046983
Stsc181266g00001 252 MobiDBLite consensus disorder prediction 124 153 - -
Stsc181266g00001 252 SMART finulus 153 203 IPR011598 GO:0046983
Stsc181266g00001 252 FunFam transcription factor BEE 3-like 144 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181266g00001 Stsc-Chr181266 12987 14170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181266g00001 47 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 52.018 9.24e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181266g00001 HLH 2.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181266g00001 - - aprc:113855800 314.309