Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181265g00010 ATGGCTTCTTCTTTGGATATGTCACTTGATGATAGGATAAAGAGCAGCAGGAGTAACAGAGAAAGAGGTAAAGGTAGAGGACGCGGTGGAGCCCGTGCCGACACTGGCCGTAGGACAGGCAGGAATCCTAGTGGTGGTGGAAGAATAACTGGTGCTGCTCGTAGAGGTCCTCTTACTGTCAATACTCGGCCGTCATCCTATGCCATTGCCAAGTCCATTCGGGGGACCCGGCCTTTTCCATGGCAGCAAGATTTGTTTGAAGATAGCTTACGAGCTGCAGGGATAGAAGGAGTTGAAGTTGGTACGAAGTTGTACATTTCAAATTTGGACCATGGAGTAACCAATGAAGACATAAGGGAGCTTTTTTCTGAGATTGGAGACTTGAAACGCTTTGTTGTTCATTATGATAAAACTGGACATCCAAGTGGTTCTGCTGAAGTTGTATATACAAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATACAATAATGTGCTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTGCCAATGCAGAATTGCCTATAACTGCTCGTGTAAATGTATCTGGGGTAAATGGGCGGAGGAAGAAGAGGACAGTTGTGATGGCACCTCGTGGAGGTCAAACTGGAGGTGGTGCTGGGCTCAGTCGTTCTGCCTTTCGAGCACAACGTGGTGGGGCAAGGCCGAAGGATGGAGCTTCAAGTGGCCGAGGCCGTTCTCGCCGCCGTGGACGTGGCAGGGTTGGACGCCAAGGGCAGGGGAAAAAGGAGAAGTCAGCTGAAGAACTTGACAAGGAATTGGAGACCTATCATGCTGAGGCTATGAACATCTCCTAG 846 0.487 MASSLDMSLDDRIKSSRSNRERGKGRGRGGARADTGRRTGRNPSGGGRITGAARRGPLTVNTRPSSYAIAKSIRGTRPFPWQQDLFEDSLRAAGIEGVEVGTKLYISNLDHGVTNEDIRELFSEIGDLKRFVVHYDKTGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPITARVNVSGVNGRRKKRTVVMAPRGGQTGGGAGLSRSAFRAQRGGARPKDGASSGRGRSRRRGRGRVGRQGQGKKEKSAEELDKELETYHAEAMNIS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181265g00010 281 CDD RRM_THOC4 102 176 - -
Stsc181265g00010 281 MobiDBLite consensus disorder prediction 200 267 - -
Stsc181265g00010 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 172 IPR000504 GO:0003723
Stsc181265g00010 281 Gene3D - 98 178 IPR012677 -
Stsc181265g00010 281 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 278 - -
Stsc181265g00010 281 Pfam C-terminal duplication domain of Friend of PRMT1 220 275 IPR025715 -
Stsc181265g00010 281 MobiDBLite consensus disorder prediction 253 267 - -
Stsc181265g00010 281 SUPERFAMILY RNA-binding domain, RBD 101 198 IPR035979 GO:0003676
Stsc181265g00010 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 179 IPR000504 GO:0003723
Stsc181265g00010 281 SMART rrm1_1 103 175 IPR000504 GO:0003723
Stsc181265g00010 281 MobiDBLite consensus disorder prediction 10 35 - -
Stsc181265g00010 281 MobiDBLite consensus disorder prediction 1 60 - -
Stsc181265g00010 281 SMART FoP_duplication_2 208 281 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181265g00010 Stsc-Chr181265 85643 90836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181265g00010 101 176 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 2.62e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181265g00010 K12881 - gmx:100801491 355.525