Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181263g00020 ATGACTTCACCGACCGACCGCCTTACCGCGGAGCAAGAACTCACCGTAATCGTCGCCGCCCTCACCAACGTCGTCACCGGATCCACCTCCTCCCCGGCGGATTTCATCCGCCACGCCGCCGCCGCATCTCAGCCTTCTTCCGCTGTCGTCGGCGCCAGTGGAGGAGGATTCGAGAGCAGCATGACGGACACGTGTCGCGAATGCAATATCAAGGGATGTTTAGGATGCAACTTCTTCCGCGAAGAGAAAAAAATTAACGGCGGCGGCAACTGCAGCAACAACAACAAGAAAATTAGTGTTCAGAAAAGGGCGAAGAAGAAGTACAGAGGAGTGAGGCAGAGACCGTGGGGAAAATGGGCGGCGGAGATTCGCGATCCGCGGCGCGCGGCTCGCGTCTGGCTTGGGACGTTCAATACGGCTGAGGAGGCCGCCATGGCTTACGACAAAGCCGCAATCGAGTTCCGCGGGCCGCGAGCCAAGCTCAATTTTCCCATGGTCGATGAGTCCCTTAGGGCCCAGGCCCAACAACCCAGCATTAACGAGGCAACTGTGAAGGATGAGAATTCGAAAGAGGAGGAGGTTGAAACGACGCCGTTTGGGAACAAGGAATGCGAGTTCTGGGAAAGAATGGGGGACGCTGATTTTCAGCAGCTTATGATGATGATGGACTTTGCCGGAGATTCATCTGATTCTGCGGCTACAGGGAACACCCTCAGTTCCTGA 723 0.5629 MTSPTDRLTAEQELTVIVAALTNVVTGSTSSPADFIRHAAAASQPSSAVVGASGGGFESSMTDTCRECNIKGCLGCNFFREEKKINGGGNCSNNNKKISVQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEEAAMAYDKAAIEFRGPRAKLNFPMVDESLRAQAQQPSINEATVKDENSKEEEVETTPFGNKECEFWERMGDADFQQLMMMMDFAGDSSDSAATGNTLSS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181263g00020 240 FunFam Ethylene-responsive transcription factor 2 106 165 - -
Stsc181263g00020 240 MobiDBLite consensus disorder prediction 184 198 - -
Stsc181263g00020 240 MobiDBLite consensus disorder prediction 171 198 - -
Stsc181263g00020 240 Gene3D AP2/ERF domain 106 166 IPR036955 GO:0003700|GO:0006355
Stsc181263g00020 240 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Stsc181263g00020 240 SUPERFAMILY DNA-binding domain 107 165 IPR016177 GO:0003677
Stsc181263g00020 240 CDD AP2 106 164 IPR001471 GO:0003700|GO:0006355
Stsc181263g00020 240 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Stsc181263g00020 240 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Stsc181263g00020 240 PANTHER DNA-BINDING DOMAIN 84 189 IPR044808 GO:0003700|GO:0009873
Stsc181263g00020 240 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Stsc181263g00020 240 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181263g00020 Stsc-Chr181263 198759 199481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181263g00020 6 167 AP2-EREBP Transcription Factor Family AT4G34410 47.368 1.36e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc181263g00020 AP2 8.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181263g00020 - - adu:107469741 386.726