Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181263g00017 ATGGAAGATGGGGCTGGTGATGATTTGTATCAAGAGCTATGGAGGTTGTGTGCAGGGCCATTAATGGATGTTCCTTGTGTTCAAGACAGAGTTTTCCATTTCCCTCCGGGCCACATTGAATTGGCCGAGATGGAATCGGATGAGGTTTATGCTCGAATCACTTTGCAGCCATCTTCAGATACTGACCCTCTAGATCCGAATCCAATTTGTTCCGAGAAACCGAAACAGAAGTTTTACTCATTTATTAAGACTTTGAGCACCTCGGATACTAGCACCCATGGAGGATTTTCGGTTCTTCGGAAGCATGCTAATGAATGCTTGCCTCAATTGGACATGACAATGGAGAATCCTACTCAGGAGTTGGTAGCAAAGGATATTCATGGGGTTGAATGGAAGTTTAAGCATATATACAGAGGACATCCAAAGAGGCACCTGCTTACAACTGGCTGGAGCTCGTTTGTTGCGGCCAAGAAATTGGTTGCCGGAGATTCCTTTGTTTTTCTAAGGGGAGAGAATGGACAACTGAGAGTAGGTGTTAGGCGTCTGAATCCGCTGCAGAGTCCTACATCTTCGTCCGTGGTGTCGACACAAAACATGCGACTCGGAGTGATTGTCACTGCAAGCCATTCTGTTATGACCAACACCATGTTTGTGGTTTGTTACAAGCCAAGGTTTGTAAGCATCTTTTAA 690 0.4522 MEDGAGDDLYQELWRLCAGPLMDVPCVQDRVFHFPPGHIELAEMESDEVYARITLQPSSDTDPLDPNPICSEKPKQKFYSFIKTLSTSDTSTHGGFSVLRKHANECLPQLDMTMENPTQELVAKDIHGVEWKFKHIYRGHPKRHLLTTGWSSFVAAKKLVAGDSFVFLRGENGQLRVGVRRLNPLQSPTSSSVVSTQNMRLGVIVTASHSVMTNTMFVVCYKPRFVSIF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181263g00017 229 SMART B3_2 81 183 IPR003340 GO:0003677
Stsc181263g00017 229 Pfam B3 DNA binding domain 81 181 IPR003340 GO:0003677
Stsc181263g00017 229 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 224 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc181263g00017 229 Gene3D - 79 182 IPR015300 -
Stsc181263g00017 229 CDD B3_DNA 80 181 IPR003340 GO:0003677
Stsc181263g00017 229 FunFam Auxin response factor 79 183 - -
Stsc181263g00017 229 SUPERFAMILY DNA-binding pseudobarrel domain 69 205 IPR015300 -
Stsc181263g00017 229 ProSiteProfiles B3 DNA-binding domain profile. 81 183 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181263g00017 Stsc-Chr181263 177733 179316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181263g00017 4 225 B3 DNA Binding Superfamily AT2G46530 56.809 2.36e-95 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc181263g00017 B3 6.5e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181263g00017 K14486 - gmx:100790981 313.538