Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181263g00002 ATGCTTCAGATTCGGCTTAGTAAGGCTCCTGCCTCAGAAGGGTCGGCAGGGGTTAAGCCCCCACCTGTTGAAACTGTTACCGTCGCTTGCCCTGACCATTTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGATCAGCTACTGCTGCTTCGCTTGTCAAGACGTTGGGCCGTAGATCACGGCGCCAGCTGGGTGAGCGAGTCCATTTCTGCGTTCGCTGTGATTTTCCAATTGCTATATATGGACGACTGAGCCCTTGTGAGCATGCATTTTGTCTCGATTGTGCTAGAAGTGATTCAATGTGTTACCTGTGTGATGAACGAATCCAAAAGATTCAGACAATCAAAATGATGGAAGGAATCCTCATATGCGCAGCTCCTCACTGTCTCAAGTCTTTCTTGAAGAAGGNNNNNNNNNNCGAGGTACAGAGTGTTAGGCAATCTACAGCTTCAGATGCTCGAGGTCCACAAAGGCCAGTTTTCTCTCCTGGATCAAATTCCCAGCAGCATGATCAGGAAGACAAAACTCGTCGACAAACTCCAAGAGATCAACCACCTTCAAGAGGGAACCTGCAGCCAAAGCCACCATTTTTTGGCCAACAAAATCACCCTTCTGACTCCATGCCAAGCTCTGGTTTAGGGATTCAACAGAGCTTCCATCAACATAGTTTTGACATGCCACATCCCCAACAAGAACCTTCCCAGTTTGCTGACAGGCAGCAATCAATTGCTCCAGAGACCCCATTTCCTGAGTACCCACCTATGCATTCTGGTCAACCTCCCAATATGCCCACAATGGTTACTTCAAACCCAATGCTGAACCCTCCTATGCCATTTGGTTATCCCCCTTACCCACAGGATCGTGCTCAACCATTTTATGGTGCTCCCTATGATATACCTAGGCAGGATTCTGCATCTGATATGGGTGGAGACCAGAGTTCATTACTGGGTTTCCCCCAAGGGGTCCCAGGTGGCCCAAATTTCCCTGGAAATTATCCCCAGCCCTGGCATCCAGGGATTGGTGGTTTGCCTTTTGAACAAGGACCAGGCGGTATGGTTGTGGATCCAAGGGATGCCAAAGGCGTATTGGCACCACAGCCCATGAACCTGCCGCCGCCTCCACCACCTCCACCCCACATGTCGCACATGAAGCAAAATTACTATCCCGGTGATGTTGCACATGAAGGTCAGGGTTATGGATGGCAACATGATAGTCGTGATAGCTTCGGTGGCCAAGGCTAG 1245 0.4956 MLQIRLSKAPASEGSAGVKPPPVETVTVACPDHLVLADLPVAKGIGSATAASLVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSMCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKXXXXEVQSVRQSTASDARGPQRPVFSPGSNSQQHDQEDKTRRQTPRDQPPSRGNLQPKPPFFGQQNHPSDSMPSSGLGIQQSFHQHSFDMPHPQQEPSQFADRQQSIAPETPFPEYPPMHSGQPPNMPTMVTSNPMLNPPMPFGYPPYPQDRAQPFYGAPYDIPRQDSASDMGGDQSSLLGFPQGVPGGPNFPGNYPQPWHPGIGGLPFEQGPGGMVVDPRDAKGVLAPQPMNLPPPPPPPPHMSHMKQNYYPGDVAHEGQGYGWQHDSRDSFGGQG 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181263g00002 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Stsc181263g00002 414 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Stsc181263g00002 414 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Stsc181263g00002 414 MobiDBLite consensus disorder prediction 367 383 - -
Stsc181263g00002 414 MobiDBLite consensus disorder prediction 146 414 - -
Stsc181263g00002 414 MobiDBLite consensus disorder prediction 195 243 - -
Stsc181263g00002 414 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Stsc181263g00002 414 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 137 IPR040383 GO:0016567|GO:0061630
Stsc181263g00002 414 MobiDBLite consensus disorder prediction 146 170 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181263g00002 1 411 C2H2 Transcription Factor Family AT5G01160 44.884 4.61e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181263g00002 K15685 - gmx:100817582 667.151