Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181262g00052 ATGGTGAATAAAAGAAAGGAGAGGGAAGGTGAAGAAGGAGTGGAAACTAAGAGCAGTGAAGAATTGAGCAATGAGTGGGAGCAGATAAGGGAGGAGGCTGCATCAGTGGCAGCTGCATTACTCGGAGCAAGAAGAGCCAAAAAGCGTTTCATTGGTGTGCGCCAACGTCCTTCAGGGCGATGGGTGGCCGAGATCAAAGACACCATACAAAACATTAGGCTGTGGTTAGGAACCTATGACACAGCTGAAGATGCTGCTAGAGCTTATGATGAGGCTGCTCGCTTGCTTCGCGGTGCTAACACCCGCACAAATTTCTTCCCATCACAAGATCCTGATCCTGTTCCAGCTCTTCCTCCAAAGATCGCGAAACTCCTCCTTCTTAGGCTCAAAGCTAGAAGCATTGCCACTTCTTGCATGGTTACTTCTTCTTTTCCTAGTAACCAATGCGAGCAAGAAATAAAGGCAAAGCCAGAACCAGAGCCAGAACTAGAACTAGAACCAAAACCAGAACCCCTTTTTTCTACACAAATAGAACAACAAACATACCAATTAGAAAATTTTCTAGATATTGAGGGAAATGGGGCTGTTGGAGAGAATTATGATGGTGCTAGTTATGGTTCTGCTCTCACAAATAGTTGTGACTGTAGTACCATAACTTGTGACTATGGTGGAACTAACAATGTAGCAAGTTGTGACCAAGAGGTTTGTATGGAGAATTTGCAGATGGAGGATGGCTGTGCTAGCAATGTTGATGATGGAAGAAACAATCAAATTGTTAGGCCTGATGGAGAATTTGAAGACTGCAATGCTGGTTTCATTGACTTCCACTTTTTGGATACTGTTGGATCATTGGATTGCTCTTCTTCCCCATTTGAGATAGCCGAGGAAATGGTGGGGCCAATGGTGGAAGAGAATTATGATGTGGATGATTCACCATTGCTTAGGATGAAGTATGAAAGAAAATTCTCAGCATGCCTTTATACATTCATTGGTGTTGGTGAGTGTTTGAGGCTGCAAGATGGACCTGAATAG 1032 0.438 MVNKRKEREGEEGVETKSSEELSNEWEQIREEAASVAAALLGARRAKKRFIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFFPSQDPDPVPALPPKIAKLLLLRLKARSIATSCMVTSSFPSNQCEQEIKAKPEPEPELELEPKPEPLFSTQIEQQTYQLENFLDIEGNGAVGENYDGASYGSALTNSCDCSTITCDYGGTNNVASCDQEVCMENLQMEDGCASNVDDGRNNQIVRPDGEFEDCNAGFIDFHFLDTVGSLDCSSSPFEIAEEMVGPMVEENYDVDDSPLLRMKYERKFSACLYTFIGVGECLRLQDGPE 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181262g00052 343 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Stsc181262g00052 343 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Stsc181262g00052 343 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Stsc181262g00052 343 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Stsc181262g00052 343 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Stsc181262g00052 343 CDD AP2 48 105 IPR001471 GO:0003700|GO:0006355
Stsc181262g00052 343 MobiDBLite consensus disorder prediction 1 25 - -
Stsc181262g00052 343 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Stsc181262g00052 343 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Stsc181262g00052 343 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 220 - -
Stsc181262g00052 343 FunFam ethylene-responsive transcription factor RAP2-11 48 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181262g00052 Stsc-Chr181262 244252 245283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181262g00052 47 108 AP2-EREBP Transcription Factor Family AT5G19790 75.385 7.56e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc181262g00052 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181262g00052 K09286 - gmx:100793940 293.508