Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181262g00043 ATGGGTAGGTCACCATGCTGTGAGAAGGTGGGGTTGAAGAAAGGGCCATGGACTCCTGAAGAAGACCAAAAGCTCATGTCCTATATTGAAAAACATGGCCATGGAAGCTGGCGTGCTTTGCCTTCCAAAGCTGGACTTCAAAGATGTGGAAAGAGTTGTAGACTTAGGTGGACTAACTACCTCCGACCTGATATAAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATTATTCAGCTTCATGCCCTTCTTGGAAACAGATGGTCAGCAATAGCAGCTCAACTTCCTAAGAGGACTGACAACGAAATCAAGAACTACTGGAACACTCACCTAAAGAAGAGGCTAACAAGGATGGGAATAGATCCCACCACTCACAAGCCAAAAGCTGATGCCATGGCTGGTGGCTCAGGCGCCGCGTCCACTTCACAGTCCAAGGACGTGGCCAATCTCAGCCACATGGCTCAGTGGGAGAACGCTCGTCTCGAAGCCGAAGCAAGGCTCGTTAGAGAGTCGAAGCTTCTTCTTCAGGTTCAGCAGCAGGCACAACAACAAACAAACACAACACAACCTCCTCCTCCGACTCGGCTCGTCCTTAACAAGATCACGGCTGCGGCTCATCAACAACCAATGCTTCCGCCGTGTCTTGACGTGCTCAAGGCATGGCAGAACTCATGGTCGTCGAAGCCGCAACTGTCAGTACCGGCAAAAGAAAACTTCAAGATGCAGAGTATGTACGCCATGATGCTCTCCACCGATGAGAATCTTGAATCTCCAACTTCCACCTTGTGCTTCCCTGGTGGGAGTGGAGCCATGCTTCCCATGATGTCTACTACAACCACGGCGAACACTTCTATGACAGTAGATATTCTCAACGAAAACTTACTTATTCCTTCCCTCACGAAAATTAATAAGATTGATGGCAACGGAAGCACGGTGAGCCCATGTGAGGAAGGAGTGTTCATTACGAAAGGAGGAAACAATAACAGTGAGTCATCATGGTACCTGAACAATAATAATAATAATCCTGAGACAGAACTTGATGACGATGAAATAGTGGAAAACAAAAGCAATAACTTGGGAGATGATGACATCATGGTGGCAGTGGAAGCATTCAGAGGAAGAGGCGGAGGAGGAGGAGCAAGTGGTGGAGGGGGTTACGTTGTACCACCAAGCAGCGATGTTGTGGTAATGGAAGCAGGACTCATAAGCAGCAATAATGGTGATGATGATGATGGCCACATGCCTTACGATTCAATCATGAATGATGGTGACGGAAGCATCTGCAACGTGAGCCTCGAAGAGAATAAGCATTATTGGAACGCCATACTTAGCTTGGTCAATGATGCTCAACTCATGTTCTAA 1365 0.4755 MGRSPCCEKVGLKKGPWTPEEDQKLMSYIEKHGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKADAMAGGSGAASTSQSKDVANLSHMAQWENARLEAEARLVRESKLLLQVQQQAQQQTNTTQPPPPTRLVLNKITAAAHQQPMLPPCLDVLKAWQNSWSSKPQLSVPAKENFKMQSMYAMMLSTDENLESPTSTLCFPGGSGAMLPMMSTTTTANTSMTVDILNENLLIPSLTKINKIDGNGSTVSPCEEGVFITKGGNNNSESSWYLNNNNNNPETELDDDEIVENKSNNLGDDDIMVAVEAFRGRGGGGGASGGGGYVVPPSSDVVVMEAGLISSNNGDDDDGHMPYDSIMNDGDGSICNVSLEENKHYWNAILSLVNDAQLMF 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181262g00043 454 CDD SANT 69 112 IPR001005 -
Stsc181262g00043 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc181262g00043 454 Gene3D - 13 66 - -
Stsc181262g00043 454 CDD SANT 16 61 IPR001005 -
Stsc181262g00043 454 FunFam MYB transcription factor 68 129 - -
Stsc181262g00043 454 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc181262g00043 454 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc181262g00043 454 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc181262g00043 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc181262g00043 454 MobiDBLite consensus disorder prediction 122 147 - -
Stsc181262g00043 454 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc181262g00043 454 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc181262g00043 454 Gene3D - 69 116 - -
Stsc181262g00043 454 SMART sant 66 114 IPR001005 -
Stsc181262g00043 454 SMART sant 13 63 IPR001005 -
Stsc181262g00043 454 FunFam MYB-related transcription factor 13 66 - -
Stsc181262g00043 454 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181262g00043 Stsc-Chr181262 205439 207112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181262g00043 1 210 MYB Transcription Factor Family AT3G01140 70.952 3.34e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc181262g00043 Myb_DNA-binding 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181262g00043 K09422 - gmx:100799222 455.292