Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181262g00040 ATGGCAGAAGATGAGTATACTCAGCAACTGAGGTCCAAAGCAACTGAGCTTTTCCTCAGAGAAGAATGGAAGGAATCCATTGACGCCTACTCCAACTTCATCTCTCACTGCACCCACCACAAATCACTCTGCATTGCCCTCTGCAACCGCGCCGAAGCCAGTTCTCGCCTTCGCCACTTCCATTGCGCCTTGCAAGACTGCGATCGCGCTTTGCAGATCGATGCAACGCATTTCAAGACCCTACTATGCAAAGGTAAGATCTTGCTCTCCCTAAATAGGTATTCACTCGCACTTGAATGCTTTAAAACAGCTTTGCTTGACCCCCAAGCTGCTGCCACCTCCGAAAACCTAATTGGGTATGTTGACAAGTGCAAAAAGTTTGAGTTTTTCGCGAGGACTGGCTCCTTGGATCTCTCCCATTGGGTTTCCAATGGCTTTCAAGGGAAGCCTCCGGAGCTTGCAGAGTACATTGGTGCGGTCGAGATCAGGAAATCGGATATCAGCGGCCGCGGCCTTTTCGCAACCAAGAACATCGATGCAGGGTCGTTGATCTTGGTCACCAAGGCAATTGCAATGGAGAGGAGTATATTGGCAGGTAAGGATTTAAGCGAGGATGCACAATTAGCAATGTGGAAGAATTTCGTTCAGAAAGTTGCTGAATTTGCAAGGAAATGTCACAAAACCCGGGATTTGATTGGTAAATTGTCAATTGGGGAAGAAGATGAGGAAGAACTTGAGGTTCCTGATATAGATTTGTTTAGGCCTGAGCATGTTGGAAACGTGGATTCATGTGAGACAGTTGATATGGAGAAGTTGCTGGCCATTTTGGATGTGAATTCACTCACTGAGGATGCTGTTTCTGCCAATGTGTTGAGGAAGAACAATGATTTCTATGGTGTTGGATTGTGGTTGCTACCTTCCTTCATCAATCATTCATGCTGCCCAAATTCGCGGCGATTGCACGTTGGGGACTACTTAATAGTTCATGCCTCCAAGGATCTTAAGGCCGGAGAAGAGATCACTTTCGCCTATTTAGATCCGCTTAGTCCTCTGAGCAAGCGAAGGGAGATGTCAATGACTTGGGGGATTCAATGCAAGTGTAAGAGGTGTAGATTTGAAAGTGATGTTTTCGCCAAACAAGATATTAAGGAGATTGAGATTGGGCTTGAAAGAGGGATGGATGTTGGTGGCGTGGTTTATAAATTGGAGGAACACATGAAGAGATTGAAGGTTAGGGGAAAAGAGAAGGCCTATCTGAGAGCTTCATTTTGGTCCGCATATTGTGAGGCTTATAGGTCTGATAGGTCTATGAAGAGGTGGGGAAGGCGGATTCCGGCGATGGATGCCGTGGTCGATAGTGTGGTTGATGCTGTGGGAGGGGATCATAGGTTGCTTAAGATCATGGTGGAGGAGTTGAAGAAAAATGGCGGCAGTGGCAGCAGCCTTGTGGGGATGGAAAAAGCTTTGAAGCTAGCAAGAGATGTGTATGGGAAGGTAGTTAAAAAGCAAGCAATGAAGACACTTATTGAGTTCTGCATTGGTGATTGA 1548 0.4638 MAEDEYTQQLRSKATELFLREEWKESIDAYSNFISHCTHHKSLCIALCNRAEASSRLRHFHCALQDCDRALQIDATHFKTLLCKGKILLSLNRYSLALECFKTALLDPQAAATSENLIGYVDKCKKFEFFARTGSLDLSHWVSNGFQGKPPELAEYIGAVEIRKSDISGRGLFATKNIDAGSLILVTKAIAMERSILAGKDLSEDAQLAMWKNFVQKVAEFARKCHKTRDLIGKLSIGEEDEEELEVPDIDLFRPEHVGNVDSCETVDMEKLLAILDVNSLTEDAVSANVLRKNNDFYGVGLWLLPSFINHSCCPNSRRLHVGDYLIVHASKDLKAGEEITFAYLDPLSPLSKRREMSMTWGIQCKCKRCRFESDVFAKQDIKEIEIGLERGMDVGGVVYKLEEHMKRLKVRGKEKAYLRASFWSAYCEAYRSDRSMKRWGRRIPAMDAVVDSVVDAVGGDHRLLKIMVEELKKNGGSGSSLVGMEKALKLARDVYGKVVKKQAMKTLIEFCIGD 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181262g00040 515 SUPERFAMILY TPR-like 4 130 IPR011990 GO:0005515
Stsc181262g00040 515 SMART tpr_5 44 77 IPR019734 GO:0005515
Stsc181262g00040 515 SMART tpr_5 78 110 IPR019734 GO:0005515
Stsc181262g00040 515 SMART tpr_5 7 40 IPR019734 GO:0005515
Stsc181262g00040 515 Gene3D SET domain 263 377 IPR046341 -
Stsc181262g00040 515 ProSiteProfiles SET domain profile. 158 345 IPR001214 GO:0005515
Stsc181262g00040 515 CDD SET_SMYD 273 370 - -
Stsc181262g00040 515 SMART set_7 158 351 IPR001214 GO:0005515
Stsc181262g00040 515 Pfam SET domain 169 344 IPR001214 GO:0005515
Stsc181262g00040 515 Gene3D Tetratricopeptide repeat domain 5 122 IPR011990 GO:0005515
Stsc181262g00040 515 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 509 - -
Stsc181262g00040 515 SUPERFAMILY SET domain 159 370 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181262g00040 Stsc-Chr181262 181309 182994 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc181262g00040 SET 8.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181262g00040 - - mtr:11446296 790.415