Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181262g00039 ATGGAAGTAAGTAAAAGTTGTGAACTACCACCAGGGTTTAGGTTTCACCCAACAGATGAGGAGCTAATTGTGTATTACCTTTGTAACCAAGCAACATCAAAGCCCTGCCCTGCTTCCATCATCCCTGAAGTTGATATTTACAAATTTGATCCATGGGAGTTGCCTGGTAAGGCAGAGTTTGGTGAGAAGGAACGGTACTTCTTTAGCCCAAGAGACAGGAAGTATCCCAATGGGGTTAGACCAAACCGTGCAACAGTTTCTGGGTATTGGAAGGCCACAGGAACAGACAAGGCTATTTACAGCAAGTGTAAGCATATTGGTGTCAAGAAGGCTTTGGTTTTCTACAAGGGAAGACCTCCAAAGGGTATCAAAACTGATTGGATCATGCATGAGTATCGCCTTCTTCAACCATCCACTAACAGGATTACTGGATCCATGAGACTGGATGATTGGGTCTTGTGTAGGATCTATAAGAAAAAGCATGCAGCTAAAGCATTATTGGATCAAGGAGAGGAATACCCAACAACAGTCCAGATTAATCTGAATGCATCAACCAGCAATGATCATGAAAAGGAGTTGATGATGATGAAGAACCTTCCAAGGACTTGTTCCCTTACTTATCTTTTGGACATGAATTACTTTGCTCCAATCTCACACCTCTTATCTGATGGATCCTATAACAACTACTCATCATCAGCCTTTGAAAATTTTCAGCATGGCAATAATGTTGATGACAACATTGGAATAGTAGACCCCTTTGTGAAACCTCAAATGTTTGAAATGGATGATAACTATTATGCTCAAGATTCTGGCAAGAGCCAAGTGATGAAGCAAGGGAATGATCTAACAGGATATTACTAA 861 0.41 MEVSKSCELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPGKAEFGEKERYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYSKCKHIGVKKALVFYKGRPPKGIKTDWIMHEYRLLQPSTNRITGSMRLDDWVLCRIYKKKHAAKALLDQGEEYPTTVQINLNASTSNDHEKELMMMKNLPRTCSLTYLLDMNYFAPISHLLSDGSYNNYSSSAFENFQHGNNVDDNIGIVDPFVKPQMFEMDDNYYAQDSGKSQVMKQGNDLTGYY 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181262g00039 286 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 218 - -
Stsc181262g00039 286 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Stsc181262g00039 286 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Stsc181262g00039 286 FunFam NAC transcription factor 18 163 - -
Stsc181262g00039 286 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Stsc181262g00039 286 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181262g00039 Stsc-Chr181262 177716 178847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181262g00039 1 220 NAC Transcription Factor Family AT1G69490 67.672 8.52e-108 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181262g00039 NAM 8.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181262g00039 - - adu:107489303 375.941