Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181262g00036 ATGGGTCATGAAAATTTCTTTTGTTTGTTTGTTTCAGGTGGGGCTTGTGGATATGGGAACCTCTATAGCCAGGGGTACGGAACAACAACTGCTGCTTTGAGCACTGCACTCTTCAACAATGGCTTGAGCTGCGGCTCTTGTTATGAAATTAAGTGTGAGAATGACCACAAATGGTGCCTCCCTGGCTCCATTGTAGTCACTGCCACTAACTTCTGCCCTCCAAACAATGCATTGCCAAACAATGCAGGTGGATGGTGCAACCCCCCTCTTCACCACTTTGATCTAGCTCAGCCTGTGTTCCTTCGCATTGCTCAATACAAAGCTGGAATAGTCCCTGTCGCTTACAGGAGGGTGGCATGCAGGAGAAAGGGAGGAATAAGGTTCACTATTAATGGACATTCCTACTTCAACCTAGTACTAATTACAAACGTTGGTGGTGCTGGTGATGTTCATTCTGTGTCCATCAAGGGCTCAAAGACCGGTTGGATGGCAATGTCAAGAAACTGGGGACAGAACTGGCAGAGCAATGACTATCTCAATGGCCAAAGCCTCTCATTCAAGGTCACTACAAGTGATGGCCGTACAGTGATCTCTAACAATGTTGCCCCAGCTGGTTGGACCTTTGGCCAAACCTACACTGGTGCTCAATTCCACTAG 657 0.4749 MGHENFFCLFVSGGACGYGNLYSQGYGTTTAALSTALFNNGLSCGSCYEIKCENDHKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVAYRRVACRRKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWMAMSRNWGQNWQSNDYLNGQSLSFKVTTSDGRTVISNNVAPAGWTFGQTYTGAQFH 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181262g00036 218 SMART dpbb_1 30 115 IPR007112 -
Stsc181262g00036 218 PRINTS Expansin/Lol pI family signature 34 52 IPR007118 GO:0005576
Stsc181262g00036 218 PRINTS Expansin/Lol pI family signature 162 176 IPR007118 GO:0005576
Stsc181262g00036 218 PRINTS Expansin/Lol pI family signature 108 124 IPR007118 GO:0005576
Stsc181262g00036 218 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Stsc181262g00036 218 PRINTS Expansin/Lol pI family signature 12 30 IPR007118 GO:0005576
Stsc181262g00036 218 SUPERFAMILY Barwin-like endoglucanases 12 143 IPR036908 -
Stsc181262g00036 218 Gene3D - 5 121 IPR036908 -
Stsc181262g00036 218 CDD DPBB_EXPA_N 13 120 - -
Stsc181262g00036 218 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 135 214 IPR007117 -
Stsc181262g00036 218 PRINTS Expansin signature 124 136 IPR002963 GO:0009664
Stsc181262g00036 218 PRINTS Expansin signature 83 100 IPR002963 GO:0009664
Stsc181262g00036 218 PRINTS Expansin signature 136 157 IPR002963 GO:0009664
Stsc181262g00036 218 PRINTS Expansin signature 200 216 IPR002963 GO:0009664
Stsc181262g00036 218 PRINTS Expansin signature 64 74 IPR002963 GO:0009664
Stsc181262g00036 218 PRINTS Expansin signature 100 113 IPR002963 GO:0009664
Stsc181262g00036 218 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Stsc181262g00036 218 PRINTS Expansin signature 25 39 IPR002963 GO:0009664
Stsc181262g00036 218 PRINTS Expansin signature 52 63 IPR002963 GO:0009664
Stsc181262g00036 218 PANTHER EXPANSIN-A15 13 217 IPR002963 GO:0009664
Stsc181262g00036 218 FunFam Expansin 125 217 - -
Stsc181262g00036 218 SUPERFAMILY PHL pollen allergen 122 214 IPR036749 -
Stsc181262g00036 218 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 13 125 IPR007112 -
Stsc181262g00036 218 Pfam Lytic transglycolase 30 115 IPR009009 -
Stsc181262g00036 218 Pfam Expansin C-terminal domain 126 203 IPR007117 -
Stsc181262g00036 218 Gene3D - 125 218 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181262g00036 Stsc-Chr181262 157967 159311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181262g00036 13 218 Expansin Gene Family AT2G03090 83.495 1.48e-133 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181262g00036 - - gmx:100527059 410.223