Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181262g00035 ATGGCTCTCGTTGAGTTTCTCTTGGTGAGTTTTCTTGCTATGGTCTCCTCAGCTTCTGCTAATGGTGGAGCAGGATGGACCAATGCTCATGCTACCTTCTATGGTGGAGGTGATGCATCAGGGACAATGGGTGGGGCTTGTGGATATGGGAACCTCTATAGCCAGGGGTACGGAACAACAACTGCTGCTTTGAGCACTGCACTCTTCAACAATGGCTTGAGCTGCGGCTCTTGTTATGAAATTAAGTGTGAGAATGACCACAAATGGTGCCTCCCTGGCTCCATTGTAGTCACTGCCACTAACTTCTGCCCTCCAAACAATGCATTGCCAAACAATGCAGGTGGATGGTGCAACCCCCCTCTTCACCACTTTGATCTAGCTCAGCCTGTGTTCCTTCGCATTGCTCAATACAAAGCTGGAATAGTCCCTGTCGCTTACAGGAGGGTGGCATGCAGGAGAAAGGGAGGAATAAGGTTCACTATTAATGGACATTCCTACTTCAACCTAGTACTAATTACAAACGTTGGTGGTGCTGGTGATGTTCATTCTGTGTCCATCAAGGGCTCAAAGACCGGTTGGATGGCAATGTCAAGAAACTGGGGACAGAACTGGCAGAGCAATGACTATCTCAATGGCCAAAGCCTCTCATTCAAGGTCACTACAAGTGATGGCCGTACAGTGATCTCTAACAATGTTGCCCCAGCTGGTTGGACCTTTGGCCAAACCTACACTGGTGCTCAATTCCACTAG 750 0.4867 MALVEFLLVSFLAMVSSASANGGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTTTAALSTALFNNGLSCGSCYEIKCENDHKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVAYRRVACRRKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWMAMSRNWGQNWQSNDYLNGQSLSFKVTTSDGRTVISNNVAPAGWTFGQTYTGAQFH 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181262g00035 249 FunFam Expansin 15 152 - -
Stsc181262g00035 249 Gene3D - 11 152 IPR036908 -
Stsc181262g00035 249 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Stsc181262g00035 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Stsc181262g00035 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Stsc181262g00035 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Stsc181262g00035 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Stsc181262g00035 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Stsc181262g00035 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Stsc181262g00035 249 Gene3D - 156 249 IPR036749 -
Stsc181262g00035 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Stsc181262g00035 249 SMART dpbb_1 61 146 IPR007112 -
Stsc181262g00035 249 PANTHER EXPANSIN-A15 6 248 IPR002963 GO:0009664
Stsc181262g00035 249 SUPERFAMILY Barwin-like endoglucanases 9 174 IPR036908 -
Stsc181262g00035 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Stsc181262g00035 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Stsc181262g00035 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Stsc181262g00035 249 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Stsc181262g00035 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Stsc181262g00035 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Stsc181262g00035 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Stsc181262g00035 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Stsc181262g00035 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Stsc181262g00035 249 FunFam Expansin 156 248 - -
Stsc181262g00035 249 Pfam Lytic transglycolase 61 146 IPR009009 -
Stsc181262g00035 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Stsc181262g00035 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Stsc181262g00035 249 CDD DPBB_EXPA_N 25 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181262g00035 Stsc-Chr181262 157967 159608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181262g00035 1 249 Expansin Gene Family AT2G03090 79.518 8.59e-151 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181262g00035 - - gmx:100527059 464.151