Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181262g00033 ATGGGTAGGGTAAAGCTCAAGATAAAGAGGCTGGAGAACATCAACGGGCGTCAAGCAACATATGCTAAAAGGAAGAATGGAATTATCAAAAAAGCTACAGAGTTATCTATTCTATGTGATATTGATATTATACTTCTCATGTTCTCTCCATCTGGAAAACCTTCTTTGTGTAGAGGCAGGCGAAGCTTTGAGGAGGTTATTGCAAAGTTTTCTCAACAAACTCCACAAGAAAGGGCAAAAAGGAAGTTGGAGAGTCTTGAAGACCTAAGTAATCAAGCTAGGCTATTACAGACTCAAATTTCAGAAACACAAAAGAGATTAAGTCAATGGAAGGAATTTGAAAAAATCAATAATGTGGAACAACTTGAACAGATGGAAAATTCATTGCGAGATTCCATCAATCAAATTCGAAACCGTAAGGAGCATATTAAAAACCAACAGCTTGTGTCACTGCAATGCAATAACCAGTTCAATGATATGCATATTCCCTTTAGAATGGGTGCTGAGCAGCATCTCCAACCTCTACCATGGATTGGTAATGGTGACAGCCCAAATCTAGTTTTACCTGATGACTCAAGCTTGCTTCTCCACAAGTGA 597 0.3853 MGRVKLKIKRLENINGRQATYAKRKNGIIKKATELSILCDIDIILLMFSPSGKPSLCRGRRSFEEVIAKFSQQTPQERAKRKLESLEDLSNQARLLQTQISETQKRLSQWKEFEKINNVEQLEQMENSLRDSINQIRNRKEHIKNQQLVSLQCNNQFNDMHIPFRMGAEQHLQPLPWIGNGDSPNLVLPDDSSLLLHK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181262g00033 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Stsc181262g00033 198 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc181262g00033 198 CDD MADS 2 54 - -
Stsc181262g00033 198 Gene3D - 15 95 IPR036879 GO:0003677|GO:0046983
Stsc181262g00033 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc181262g00033 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc181262g00033 198 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc181262g00033 198 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Stsc181262g00033 198 FunFam Agamous-like MADS-box protein AGL30 14 95 - -
Stsc181262g00033 198 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Stsc181262g00033 198 Coils Coil 76 106 - -
Stsc181262g00033 198 Coils Coil 119 146 - -
Stsc181262g00033 198 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181262g00033 Stsc-Chr181262 150273 151801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181262g00033 1 194 Type I MADS-box Gene Family AT2G03060 51.754 6.05e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc181262g00033 SRF-TF 7.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181262g00033 - - lang:109356063 298.13