Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181262g00032 ATGGGGATGGTTTATGCAGACATGGCTTCTCTTTCCCTTTCTTCCAACTACACTCTAGCCCCCTCCGCCGTTTCTTCTTCGCACGACTCCACCACCATACCCTGGGGCTTCCCCTTTGAGGAGCACCCCATCAACAACACCAGTGATCTTCTGGAGGGCACTACAAAAGGTTCTGATAGCAGCGAAGATGTTGGGGTTATTGGAGAAAACAACAACAACAATAAGAACCCTAATAATAATAACAATAAAGAAGGAGAGAGTAGTAGTGGACAGTCAAAGCTGTGTGCAAGAGGTCACTGGAGACCAGCAGAAGATTCAAAACTGAAGGAGCTTGTTGCCCTTTATGGCCCTCAGAACTGGAACCTCATAGCTGAAAAGCTTGAAGGAAGATCAGGGAAGAGTTGTAGACTTAGATGGTTCAACCAGCTTGACCCGAGAATAACAAGAAGGGCGTTCAGTGAAGAAGAGGAAGAGAGGCTGATGCAGGCTCACAGGATATATGGCAACAAATGGGCCATGATTGCCAGGTTGTTCCCTGGCAGAACAGATAACGCTGTTAAGAATCATTGGCATGTTATCATGGCTAGAAAGTATAGGGAACAATCCAGTGCTTATAGGAGGAGAAGGCTCACTCAATCTAACAATACCATTTACAGAAGAATTGATGATGATAATAATAATGTATCATCATCAGAACCTCCACCACCACATTATTTTGTGTCTGGCTTTTCATCACTGCCCTTTCATGGTGGCCGCCTTGACTTTTCTGCTTCCTCCTCTTCTTCTTCTACTACCTTGTTTCCTCACCAAACACCCTTTAATTTCTTCTCTGGAGGAGGTAGAAGCAATAATAATAGTAGTAGTAAGGGTGAGATGGTAGGAGGAGAGTATTATTATGGAAGTAATCATCATCTTCATCATTATAATGAGCAGCAGCAAGCAAATAATCATGGTTACTACACTCGTTATCCTAATCATCAGTATATGATGATGATGATGATGCCGGTGCAACAGCAACAGCAACATCAAAACAGCAGCAACCATAACAAGAGTTTTTACAGCTTCTCATCAAATTCAACCACAACAGTAGCACAGGTGCTAGCCAGTGATCCTTCACTATCATCCATGGCAGAACAACGACACAGAGATGATGAAGAACCCAGTGACCCCCCAACAACAATCCCAGAACCTCCCTTATTTATTGATTTCCTTGGAGTAGGAGCCACCACATAA 1233 0.4363 MGMVYADMASLSLSSNYTLAPSAVSSSHDSTTIPWGFPFEEHPINNTSDLLEGTTKGSDSSEDVGVIGENNNNNKNPNNNNNKEGESSSGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRITRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLTQSNNTIYRRIDDDNNNVSSSEPPPPHYFVSGFSSLPFHGGRLDFSASSSSSSTTLFPHQTPFNFFSGGGRSNNNSSSKGEMVGGEYYYGSNHHLHHYNEQQQANNHGYYTRYPNHQYMMMMMMPVQQQQQHQNSSNHNKSFYSFSSNSTTTVAQVLASDPSLSSMAEQRHRDDEEPSDPPTTIPEPPLFIDFLGVGATT 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181262g00032 410 MobiDBLite consensus disorder prediction 47 94 - -
Stsc181262g00032 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 198 IPR017930 -
Stsc181262g00032 410 MobiDBLite consensus disorder prediction 372 401 - -
Stsc181262g00032 410 ProSiteProfiles Myb-like domain profile. 144 194 IPR001005 -
Stsc181262g00032 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 143 IPR017930 -
Stsc181262g00032 410 SMART sant 96 145 IPR001005 -
Stsc181262g00032 410 SMART sant 148 196 IPR001005 -
Stsc181262g00032 410 CDD SANT 100 141 IPR001005 -
Stsc181262g00032 410 Pfam Myb-like DNA-binding domain 149 192 IPR001005 -
Stsc181262g00032 410 Pfam Myb-like DNA-binding domain 97 143 IPR001005 -
Stsc181262g00032 410 Gene3D - 150 223 - -
Stsc181262g00032 410 MobiDBLite consensus disorder prediction 44 98 - -
Stsc181262g00032 410 Gene3D - 97 148 - -
Stsc181262g00032 410 ProSiteProfiles Myb-like domain profile. 97 143 IPR001005 -
Stsc181262g00032 410 CDD SANT 151 191 IPR001005 -
Stsc181262g00032 410 FunFam MYB transcription factor 97 148 - -
Stsc181262g00032 410 FunFam MYB transcription factor 150 219 - -
Stsc181262g00032 410 SUPERFAMILY Homeodomain-like 97 190 IPR009057 -
Stsc181262g00032 410 PANTHER MYB PROTEIN-RELATED 97 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181262g00032 Stsc-Chr181262 137703 139388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181262g00032 1 209 MYB Transcription Factor Family AT1G69560 58.150 2.30e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc181262g00032 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181262g00032 K09422 - gmx:100804537 337.421