Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181262g00031 ATGTCGCAAGTTAAGGACCCGGCGATAAAGCTTTTTGGGAGGACGATTCAGCTGCCACTGATCCCCAATGACCCTTCTCCACCACCACCTCCCCCTCCTCCATATTCTTCTTCTCCAACAACTGAAGTTGAAGTGAGTTCTGCATCAAAACCAGAAACAGAGGAATCATCAAAGAGAGAACTAACCTCAACACAAGATAAAGAAGCCACAGAGGATTTGAAATCTCCCACAACAACATCTTCAGGCATATTTGAGAATCCAAAGACTCCCTCAGCTGAAAGAGAGAGTTCACTACTGAAATCATCAACAAATGGTGGAGAGCAGAGTGAGACCAGTGTTTCTCAAGAAAAAACTCCCAAGAAACCAGACAAGATACTTCCCTGCCCGCGATGCAACAGCATGGACACCAAATTCTGCTATTACAACAATTACAACGTCAATCAGCCTCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCCGGAGGAACAATGAGGAACGTGCCAGTAGGCGCTGGCCGCCGCAAGAACAAAAACTCCGCCGCCTCGCATTATCGCCAGATAATGGTCCCGGAAGCCCTTCAAGCAGCTCACCTCAATGCCTCCAATGGACTACACAATGCTGTCTTGACCTTTGGCCCAGATTCTCCTCTTTGTGATTCCATGTCCTCTGTATTGAACATTGCAGAGAAAGCCACAAATGGTGTTGTAAACGGTTTTCATCCACCAGAGGCAGCAAGTACTTTTGTTTCCTATGGTAGGGAGGATGATGGGAATGATCACTCAGTTGGAGTTTCTGGTACAACTTCAACTTCATCAGAGAGGAGAAGCCATGCCAGCTCCCATGATTCAGCTGATAAAAGAGNNNNNNNNNNCGAAAGTTTCCCTCCTCAACTAACTTACTTCCCAAGTAATTCTCCATGGCCGTATCCGTGGAATTCGCGAATGCCTCCTCCTCCTCCTCACCCCACATTTTGCCCTCCAGGCTATCCTATGTCAATATATGCCACCCCTTCATACTGGGCATGGAATGTGCCATGCATCTCACCCCAATCTCCGGTCACTGGTTCCGGCCCGAATTCACCATTGGGGAAACACTCAAGGGATGGTAACATCATAACCCCGGCCAATTCACGTAAAGAAAAGCCTGATACAGAGCAGAGCAACAACAATTCAGAAATCAATAATGTGTTGATCCCCAAGACACTTAGAATTGATGATCCTAGTGAAGCTGCAAAGAGTTCAATATGGTCAACACTAGGAATCAAGAATGAGAAGGTCAACTCTCTCAATGGAGGAGGCCTCTTCAAGGCCTTCCCTTCCAAGGGTAACGACAAGAGTCGGGTGGTCGAGGCATCGCCGATGCTGCACGCCAACCCTGCAGCCCTAACACGGTCTCTGACCTTCCACGAGCGAACCTAG 1425 0.4765 MSQVKDPAIKLFGRTIQLPLIPNDPSPPPPPPPPYSSSPTTEVEVSSASKPETEESSKRELTSTQDKEATEDLKSPTTTSSGIFENPKTPSAERESSLLKSSTNGGEQSETSVSQEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSAASHYRQIMVPEALQAAHLNASNGLHNAVLTFGPDSPLCDSMSSVLNIAEKATNGVVNGFHPPEAASTFVSYGREDDGNDHSVGVSGTTSTSSERRSHASSHDSADKRXXXXESFPPQLTYFPSNSPWPYPWNSRMPPPPPHPTFCPPGYPMSIYATPSYWAWNVPCISPQSPVTGSGPNSPLGKHSRDGNIITPANSRKEKPDTEQSNNNSEINNVLIPKTLRIDDPSEAAKSSIWSTLGIKNEKVNSLNGGGLFKAFPSKGNDKSRVVEASPMLHANPAALTRSLTFHERT 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181262g00031 474 MobiDBLite consensus disorder prediction 74 113 - -
Stsc181262g00031 474 MobiDBLite consensus disorder prediction 1 127 - -
Stsc181262g00031 474 ProSiteProfiles Zinc finger Dof-type profile. 126 180 IPR003851 GO:0003677|GO:0006355
Stsc181262g00031 474 PANTHER CYCLIC DOF FACTOR 2 1 474 IPR045174 GO:0003700|GO:0006355
Stsc181262g00031 474 ProSitePatterns Zinc finger Dof-type signature. 128 164 IPR003851 GO:0003677|GO:0006355
Stsc181262g00031 474 MobiDBLite consensus disorder prediction 352 393 - -
Stsc181262g00031 474 Pfam Dof domain, zinc finger 123 180 IPR003851 GO:0003677|GO:0006355
Stsc181262g00031 474 MobiDBLite consensus disorder prediction 21 38 - -
Stsc181262g00031 474 MobiDBLite consensus disorder prediction 247 299 - -
Stsc181262g00031 474 MobiDBLite consensus disorder prediction 48 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181262g00031 Stsc-Chr181262 128894 132196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181262g00031 1 473 C2C2-Dof Transcription Factor Family AT3G47500 41.633 9.39e-89 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc181262g00031 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181262g00031 - - gmx:100813315 515.383