Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181262g00028 ATGGAAAATTTGCACTTAGTTCTCTCAACTGATGCAAAGCCAAGGCTGAAATGGACTCCTGAACTTCACCAAAGATTCATTGAGGCAATTAATCACCTTGGAGGTCCAGAAAAAGCAACACCAAAGAGTCTTATGAGGGTGATGGGGATTCCAGGGCTCACTTTGTACCATCTCAAGAGCCATTTACAGAAATATAGACTTGGCAAAAGCCAACTACAACTAGAAATCTCTTCTGACAACAACAAACCTGAAGATTGTAGAGAAATGAAGAACATTGATGATCCTTGTAGAAGCAGAGAAGCAAGTATTGGGATACAGAATGAGATGACTGAAAGCATGCAAATTGCTGAGGCTCTCCAAATGCAAATGGAAGTACAGAAGAAACTTTATGAACAAATTGAGGTGCAGAGACACTTGCAGCTTAAGATTGAAGCACAAGGGAAGTACTTGCAATCAGTACTACACAAGGCACAAGAAACACTTGCAGAATACAGTTCTTGTCCGGCCTCGGCCGCGAAAGCTGAGCTTTCACAGTTAGTATCAATAATGAACAATGCCTGCCCCGGATCTCCTCCGGTTTCGGAACTGACAGAAACAAGAGGGTTGAGTTGGAGCCATGGGCAGAGGAAAGAGCACAGAGGAACCATGTGTTCACCTGAAATTGAAAGTTCTTTGACATCTTCTGAAAGCTCAATGGATCAAAGGCCTAATAATACTGCTTCAGTTGAATTGTTGCCACTATTCAAAGAATCCAAGGAGGATAAAGATGAAGGTATTATAGGGAGAAAGAGGAGTTCAAGCTGCTGTGTTGATCAGCCATCAAAGATGAGCAAAAAATCTGAATTAGTGCCCGATATCATTGACTTGAATTCAGAACAAATAGATTTGAATTGCAGTTCAAGCTTTTGGGAGCAATGA 918 0.415 MENLHLVLSTDAKPRLKWTPELHQRFIEAINHLGGPEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQLQLEISSDNNKPEDCREMKNIDDPCRSREASIGIQNEMTESMQIAEALQMQMEVQKKLYEQIEVQRHLQLKIEAQGKYLQSVLHKAQETLAEYSSCPASAAKAELSQLVSIMNNACPGSPPVSELTETRGLSWSHGQRKEHRGTMCSPEIESSLTSSESSMDQRPNNTASVELLPLFKESKEDKDEGIIGRKRSSSCCVDQPSKMSKKSELVPDIIDLNSEQIDLNCSSSFWEQ 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181262g00028 305 Pfam MYB-CC type transfactor, LHEQLE motif 113 160 IPR025756 -
Stsc181262g00028 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 70 IPR017930 -
Stsc181262g00028 305 MobiDBLite consensus disorder prediction 190 243 - -
Stsc181262g00028 305 MobiDBLite consensus disorder prediction 219 241 - -
Stsc181262g00028 305 SUPERFAMILY Homeodomain-like 12 68 IPR009057 -
Stsc181262g00028 305 Coils Coil 116 136 - -
Stsc181262g00028 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 254 IPR044848 GO:0003700
Stsc181262g00028 305 FunFam Myb family transcription factor 12 70 - -
Stsc181262g00028 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 13 68 IPR006447 GO:0003677
Stsc181262g00028 305 Gene3D - 12 71 - -
Stsc181262g00028 305 Pfam Myb-like DNA-binding domain 15 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181262g00028 Stsc-Chr181262 116821 118433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181262g00028 4 273 G2-like Transcription Factor Family AT1G69580 52.414 3.46e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc181262g00028 Myb_DNA-binding 2.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181262g00028 - - gmx:100787178 333.569