Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181262g00020 ATGAGCGACCATCTGGTGCTGTACGTTGACCGGCTGGTGCGTCCCGTTGTGCCCGTCGAGCCTCTAGCCCAGCACCCGGCTCAGCCATCTCCCGAACCCCAACCTTCGCTAGATGCTCCTCCAGACGCCACCGCGGGGCCCTCTGCCTCTTCTTCTCCGGAGTCCGACGAGGAAGAGGATGAGGGGGCGCCTCTCTTGCAGATGGCGGAATGCCGCATTTGTCAGGAGGAGGACACCGTCAACAATCTCGAGTCACCATGTGCTTGCAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGCGATGAGAAAGGAGACATTATTTGTGAGATATGTCACAAGCCCTATGAACCTGGTTATACTGCCCCACCACCTCGTCCGCATCCTGAAGAAACTACCATTGATATAGGTGGAGGTTGGACAATTTCTGGCACACCTTTGGACTTGCGTGATCCTCGCCTCTTGGCAATTGCTGAGGCAGAACGGCAATTCTTGGAAGCAGAGTACGATGGATATGCTGCTTCTAATGCCAGTGGTGCTGCATTTTGCCGTTCAGCTGCTCTTATTTTGATGGCTCTTCTCCTCTTGAGGCATGCACTTTCAGTCACCGATGAAGATGCTGGTGATGATCCATCCACTTTCTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTGCCTTGCTACATCATGGCTTGGGCAATCAGTATCTTGCAACGTCGGAGACAAAGACAAGTAAGTTTCAGTTTTGCTTTCCAAAGAATCTAA 783 0.5198 MSDHLVLYVDRLVRPVVPVEPLAQHPAQPSPEPQPSLDAPPDATAGPSASSSPESDEEEDEGAPLLQMAECRICQEEDTVNNLESPCACSGSLKYAHRKCVQHWCDEKGDIICEICHKPYEPGYTAPPPRPHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALSVTDEDAGDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQVSFSFAFQRI 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181262g00020 260 SMART ringv_2 70 117 IPR011016 GO:0008270
Stsc181262g00020 260 MobiDBLite consensus disorder prediction 22 40 - -
Stsc181262g00020 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 125 IPR013083 -
Stsc181262g00020 260 MobiDBLite consensus disorder prediction 20 63 - -
Stsc181262g00020 260 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 250 IPR033275 -
Stsc181262g00020 260 FunFam RING/FYVE/PHD zinc finger protein 59 127 - -
Stsc181262g00020 260 Pfam RING-variant domain 71 116 IPR011016 GO:0008270
Stsc181262g00020 260 ProSiteProfiles Zinc finger RING-CH-type profile. 63 123 IPR011016 GO:0008270
Stsc181262g00020 260 SUPERFAMILY RING/U-box 69 121 - -
Stsc181262g00020 260 Pfam Protein of unknown function (DUF3675) 122 240 IPR022143 -
Stsc181262g00020 260 Coils Coil 159 179 - -
Stsc181262g00020 260 CDD RING_CH-C4HC3_MARCH 71 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181262g00020 Stsc-Chr181262 87210 89768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181262g00020 55 120 C3H Transcription Factor Family AT2G22120 37.681 2.97e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181262g00020 - - ahf:112734090 424.476