Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181262g00017 ATGCCTTCCTCCTCCACCAACCCCACCGATCCTCGCTCCCTCAAGTGCGCCGCCTGCGGCTGCCATCGCAACTTCCACCGCCGTGACCCTCCAGAGCCTTCCACCACCACCACCACCCCCACCTTCTTAAACTGTTTCTACTCCCCTTCCACTGCAGCACCACCGCCACCGCCGCCTCAACCACTCCCTCACCGCGGCATGAGCCAAAGCACAAGCCCAAGCCTTAGCTCAAGCCCAAGCCACAGCCCTAGCCCGATGTCAAGCCCATCTTCACCTCCACCACTTTCACACGTGCCACCACCACCATCATCAGCACCGCACATGCTGTTAGCTTTAGGCAACGCGTATTCAGCAGTTCCGTCAGATCAGGAGCAGCATCAGCTTCACAGGAACTCGTTCAACAACAGCAATAACTTCTCCCCGGTGGTTCTGAACACACACTGTGGCGGCGGCAATCATAGTAGTAAGAACAAAAGGTACAGAACCAAGTTCAGCCAAGAACAGAAGGAGAAGATGTATAAATTCTCTGAGAAATTGGGTTGGAGAATGAACAACAAAGGTGATGATTCTCTTGTTCAGGATTTCTGTAATGACATCGGTGTCCCTCGTGGCGTCTTCAAGGTTTGGATGCACAATAACAAGAACACTTTCAACAAGAAGATTTCCTCTTCTTCTTCCGAACCTCCTCCTCCTCCTCCTGCAAACAACAGTAACCTCAATGAAGCTCTTCTACTTCCTCCTCATGATCAGAAAATCAATGGTGGAGGTGGCGGTGGCGGTGGCGGTGGCGATGGTGGTAGTAATAATAATAAGAATGGAGATATGAATGGAAGTAATAATAGTAGTGTCAATAATGTTGTAGCTCATGTTCCTATCACTGGGCTCTCATCTTAA 894 0.5056 MPSSSTNPTDPRSLKCAACGCHRNFHRRDPPEPSTTTTTPTFLNCFYSPSTAAPPPPPPQPLPHRGMSQSTSPSLSSSPSHSPSPMSSPSSPPPLSHVPPPPSSAPHMLLALGNAYSAVPSDQEQHQLHRNSFNNSNNFSPVVLNTHCGGGNHSSKNKRYRTKFSQEQKEKMYKFSEKLGWRMNNKGDDSLVQDFCNDIGVPRGVFKVWMHNNKNTFNKKISSSSSEPPPPPPANNSNLNEALLLPPHDQKINGGGGGGGGGGDGGSNNNKNGDMNGSNNSSVNNVVAHVPITGLSS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181262g00017 297 MobiDBLite consensus disorder prediction 85 106 - -
Stsc181262g00017 297 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 1 29 IPR006456 -
Stsc181262g00017 297 MobiDBLite consensus disorder prediction 65 84 - -
Stsc181262g00017 297 Gene3D - 145 219 - -
Stsc181262g00017 297 Pfam ZF-HD protein dimerisation region 6 29 IPR006456 -
Stsc181262g00017 297 SUPERFAMILY Homeodomain-like 149 219 IPR009057 -
Stsc181262g00017 297 MobiDBLite consensus disorder prediction 50 64 - -
Stsc181262g00017 297 MobiDBLite consensus disorder prediction 31 48 - -
Stsc181262g00017 297 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 216 - -
Stsc181262g00017 297 MobiDBLite consensus disorder prediction 23 108 - -
Stsc181262g00017 297 FunFam Zinc-finger homeodomain protein 2 148 219 - -
Stsc181262g00017 297 MobiDBLite consensus disorder prediction 265 297 - -
Stsc181262g00017 297 NCBIfam homeobox domain, ZF-HD class 158 215 IPR006455 -
Stsc181262g00017 297 MobiDBLite consensus disorder prediction 219 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181262g00017 Stsc-Chr181262 76803 77697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181262g00017 1 221 ZF-HD Transcription Factor Family AT1G69600 38.288 1.84e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc181262g00017 ZF-HD_dimer 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181262g00017 - - adu:107481218 315.079