Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181262g00013 ATGGCTAAACACTATCCTTACGACAATGTTCCACCAGAAACATTTTGTGACTCCACAGAAGACCCTGATTATTGCAAAACCCTCCTTGCAAACCAATACGGCAACGCTTACGACTACGGTCGAATTTGCGTCGACAAATCAGTGTCACAATCACAAACTTTCTTGAATTTAATGGACTCATATCTCCAGGATGATTATGAGGAGTACGATGAAAACACCATTCGAGCCCTCCAAGATTGCAGACTCCTTGCTGAACTAAACTATGATTTCTTGTACAGCACACAAGAGACGGTTAATAAATCCAGCAGTGTTCTTCAATCTTCACATGCTGAAGACATTGTGACACAACTGAGTGCCACTCTGACGAATCAACAAACATGTCTGGAAGGTCTTGAAAGCACAGCTTCCGATCAAAGTGTGAAGAGTTATGTTTCCTCTATTCTCTCCAATGACACCAGGCTCCATAGCATGTCCTTGTGTTTGGTCAAGAGGGGTTGGGCCCCTGACAAGAAAATGAAACACTCATGGAAACAAAATAAGATGCCGAAACGATTACGTGACATGTATGGTTCTAGTAAAGGCAACCATGGCCACCTCCACCTGAGGAAACTGCTTCAGACGACTGATAGCGTAAATGTAAGAGACATGGTGACTGTTAGCAAGGACGGAAGCGGAAACTTCACGACCATCAACGAAGCCATTTCTGCTGCGCCAAATAACTCTGCTGCCAGTGATGGATACTTGATTGTTTTCATCAAGGAAGGTGTGTATGAAGAGTATGTCTCCATTGACAAGCACAAGAAGCACTTGATGCTAGTTGGAGATGGAATTAACCACACAATTATCACCGGTGATCACAATGTTGTCGATGGCTTTACAACCTTCAATTCAGCAACATTTTCTGTGGTAGGAGAAGGTTTCGTAGCGGTAAACATAACATTCAGGAACACAGCAGGGCCAAGCAAGCACCAAGCAGTAGCCCTTAGAAGCGGTGCAGATTTGTCAGCATTCTACATGTGCAGCTTTGAAGGCTACCAAGACACACTCTACACCCATTCCATGCGTCAATTCTACAGCGACTGCGACATTTACGGCACCGTTGATTTTATTTTCGGCAATGCAGCCGTAGTCTTCCAAAACTGCAACATCTTCCCCCGCCTCCCTATGAGCGGCCAATTCAACACAATTACCGCACAAGGCAGAACCGATCCGAACCAGAACACCGGAATGTCCATACACAACGCAACCGTGCGACCTGCTGACGATTTAGCACCTCTTGTTGGTTCTGTGCAGACGTACCTTGGTAGGCCATGGAAGCAATTCTCGAGGACAGTTATCATGGAATCTTTTTTGGATGGTTTTGTTGATCCTGCTGGGTGGCATGATTGGAGTGGGAATTTTGCGCTGAGTACTTTGTATTACGCTGAGCATAATAATTCGGGAGCAGGTTCAAGCACTGTAGGTCGAGTTTTGTGGCCTGGTTATCATGTTATTGGGCCAATGGATGCTGCTAATTTCACGAGGCCAGAAGCAGACATGTTCAGAGAGCAGCGAGGCAGGAGGAGCAGAGTGAGGGGGATCGTGATTATGAGCAGAAACAGACAACAGAAGCAAAAGGGCCTAATGGGCCAACATTCTGCTTGGTCGAACCCGAACAGCCCAAATTTCTCAGGACGCAAGAATCCACGTTGA 1692 0.4598 MAKHYPYDNVPPETFCDSTEDPDYCKTLLANQYGNAYDYGRICVDKSVSQSQTFLNLMDSYLQDDYEEYDENTIRALQDCRLLAELNYDFLYSTQETVNKSSSVLQSSHAEDIVTQLSATLTNQQTCLEGLESTASDQSVKSYVSSILSNDTRLHSMSLCLVKRGWAPDKKMKHSWKQNKMPKRLRDMYGSSKGNHGHLHLRKLLQTTDSVNVRDMVTVSKDGSGNFTTINEAISAAPNNSAASDGYLIVFIKEGVYEEYVSIDKHKKHLMLVGDGINHTIITGDHNVVDGFTTFNSATFSVVGEGFVAVNITFRNTAGPSKHQAVALRSGADLSAFYMCSFEGYQDTLYTHSMRQFYSDCDIYGTVDFIFGNAAVVFQNCNIFPRLPMSGQFNTITAQGRTDPNQNTGMSIHNATVRPADDLAPLVGSVQTYLGRPWKQFSRTVIMESFLDGFVDPAGWHDWSGNFALSTLYYAEHNNSGAGSSTVGRVLWPGYHVIGPMDAANFTRPEADMFREQRGRRSRVRGIVIMSRNRQQKQKGLMGQHSAWSNPNSPNFSGRKNPR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181262g00013 563 CDD PMEI-like_3 14 167 - -
Stsc181262g00013 563 Gene3D - 210 518 IPR012334 -
Stsc181262g00013 563 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Stsc181262g00013 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 13 164 IPR035513 -
Stsc181262g00013 563 Pfam Pectinesterase 217 507 IPR000070 GO:0030599|GO:0042545
Stsc181262g00013 563 SMART PMEI_2 7 161 IPR006501 GO:0004857
Stsc181262g00013 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 14 164 IPR035513 -
Stsc181262g00013 563 Pfam Plant invertase/pectin methylesterase inhibitor 13 146 IPR006501 GO:0004857
Stsc181262g00013 563 FunFam Pectinesterase 210 514 - -
Stsc181262g00013 563 MobiDBLite consensus disorder prediction 531 563 - -
Stsc181262g00013 563 PANTHER PECTINESTERASE 14 508 - -
Stsc181262g00013 563 SUPERFAMILY Pectin lyase-like 215 504 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181262g00013 Stsc-Chr181262 59630 61861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181262g00013 14 507 Carbohydrate Esterase AT1G02810 54.563 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181262g00013 K01051 - gmx:100813051 675.241