Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181262g00012 ATGGAAGAGAGAAACGATAATAATGGTGAGAAACTAGATGAGATCATGTTACCAGGTTTCAGGTTCCATCCAACTGATGAGGAGCTTGTTGGTTTCTATCTTAAGAGAAAGATTCAGCAAATGCCTCTCTCCATTGAGCTCATCAAGCAACTTGATATCTATAAGTATGATCCCTGGGATCTTCCAAAGGTGGCAGGTACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAATACAGGAACAGTGCAAGGCCAAATAGGGTCACTGGAGCTGGATTCTGGAAAGCTACAGGGACTGACAGGCCTATTTACTCCTCAGAGGGTTCAAAGTGCATTGGCCTCAAGAAATCTTTGGTCTTCTACAAAGGCAGAGCTGCCAAAGGTGTTAAAACTGATTGGATGATGCATGAGTTCAGGCTCCCTTCTCTTTTAGACTCTTCTTCTTCTCCTCCTAAGAAATACTTTGACAAAACCACCATTCCTGCTAATGACTCTTGGGCAATCTGCAGAATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCACTCTCTCACTCTTGGGTTTCTTCTACCTTACCTGAAACAACCACCACCACCACTGATGATCATATGCTAACCAATGATAGAGATCACACATTCCATCAGTTTTGTTCATCCAACATGATGCCAACATTGATGGCAAAGAAAACTAGCAGCAGCTTCATGAGCCAGTTCTGCACTAACTACAGTACTGACACACAAATCCAAGATGTTGCATCATCTTATAAACCCTTCATTAATATTAATCCATTGCTTTACAAACACTTTGATCATCATCATCATCAATTACCACCCATGATCTCAAATGGAGATCTTATAAGTAACAATGGTTTAAATTTAATACCCTCTTCTACAAATACTCCTCCACTTGAAACTTGTTCCTCTAACAGTACTGCAAAACCTAGTATGGATTTTTCTTCATTGTTGCTGAACATGTCATCTTCTGTTCTTGGAGATTTTGGTGGAAAGACAACATCATCATCATCTTCATCACAAGAGGGTACAGCAACAGCAGCAACAACAATCACAAGTAGCTTCGGTGGTGGAATGCAAGAGCACTACTCAACAATACCATTACTGCGCGAGATGCATCAAGGAAACAACAACAACAACAACATTGGCATGAGCAACAACAACAATGTGTCTGGTGGTGGTGGTGGTGAAGAACAAGAGTTGGAGAAAGTAGGAGGATCCATTGTTGGGTTTCCATTCATGAATATGGGGGATGCATGGAAGTCAAATATGCTTTGGGATACTTCCTCTTGTCCCTTGTGA 1323 0.4119 MEERNDNNGEKLDEIMLPGFRFHPTDEELVGFYLKRKIQQMPLSIELIKQLDIYKYDPWDLPKVAGTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLLDSSSSPPKKYFDKTTIPANDSWAICRIFKKTNATAQRALSHSWVSSTLPETTTTTTDDHMLTNDRDHTFHQFCSSNMMPTLMAKKTSSSFMSQFCTNYSTDTQIQDVASSYKPFININPLLYKHFDHHHHQLPPMISNGDLISNNGLNLIPSSTNTPPLETCSSNSTAKPSMDFSSLLLNMSSSVLGDFGGKTTSSSSSSQEGTATAATTITSSFGGGMQEHYSTIPLLREMHQGNNNNNNIGMSNNNNVSGGGGGEEQELEKVGGSIVGFPFMNMGDAWKSNMLWDTSSCPL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181262g00012 440 MobiDBLite consensus disorder prediction 387 407 - -
Stsc181262g00012 440 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Stsc181262g00012 440 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 255 - -
Stsc181262g00012 440 MobiDBLite consensus disorder prediction 387 401 - -
Stsc181262g00012 440 SUPERFAMILY NAC domain 16 177 IPR036093 GO:0003677|GO:0006355
Stsc181262g00012 440 MobiDBLite consensus disorder prediction 337 358 - -
Stsc181262g00012 440 ProSiteProfiles NAC domain profile. 16 177 IPR003441 GO:0003677|GO:0006355
Stsc181262g00012 440 Gene3D NAC domain 25 182 IPR036093 GO:0003677|GO:0006355
Stsc181262g00012 440 FunFam NAC domain-containing protein 35 25 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181262g00012 Stsc-Chr181262 57449 59036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181262g00012 1 225 NAC Transcription Factor Family AT1G26870 71.556 1.00e-110 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181262g00012 NAM 8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181262g00012 - - gmx:100783995 446.817