Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181261g00026 ATGGTTCGGCAGAAGATAAAGATAAAGAAGATAGACAACATAACAGCGAGACAAGTAACGTTCTCAAAGAGGAGAAGAGGGATCTTCAAGAAAGCACAAGAGCTTTCTGTTCTTTGTGATGCTGATGTTGCTCTCATAATTTTCTCTGCCACTGGGAGGCTTTTTGAATATGCTAGCTCCAGTATGAAGGACATAACTGCAAGGTATGCCCAGCACACGCATGAGATAAGTAGATCAACTGACAGAGCCCTAGAACTGCAGCAGCTGGAGAATGTCAATAACGATGAATTACTTACGGAAGTTGCTAATAGAACTCACGAATTAAGGCAGATGAAAGGTGAAGATTTTCAGGGGCTGAGCCTGGAAGAATTACTCCAACTTGAGAAAGCACTTCAAACAGGATTAAATCGGGTGATCGAGACAAAGGAAAAGCTTATCATGGATGACATTGCAGCACTTCAGAAAAAGAGCGCGGAATTAGAACAAGAGAACAAGCAGTTAAAGCAAAAGATGGAGATGGTGAAAGTTCAGAAAAGTGTATTAGTGATGGATTCAGGGGATACTGGAATGCAAGAAGTGGTGTCATCGGAATCATTAAATAATGCATGCAGCTGCATCAGTAGTTGCGCTCCTTCTTCTCTTGAAGATGATTCCTCTGATACATCTCTTAAGTTAGGGTTGCCCTTCCGTAATTGA 696 0.4167 MVRQKIKIKKIDNITARQVTFSKRRRGIFKKAQELSVLCDADVALIIFSATGRLFEYASSSMKDITARYAQHTHEISRSTDRALELQQLENVNNDELLTEVANRTHELRQMKGEDFQGLSLEELLQLEKALQTGLNRVIETKEKLIMDDIAALQKKSAELEQENKQLKQKMEMVKVQKSVLVMDSGDTGMQEVVSSESLNNACSCISSCAPSSLEDDSSDTSLKLGLPFRN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181261g00026 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc181261g00026 231 MobiDBLite consensus disorder prediction 210 231 - -
Stsc181261g00026 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc181261g00026 231 Coils Coil 143 177 - -
Stsc181261g00026 231 Pfam K-box region 94 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181261g00026 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Stsc181261g00026 231 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Stsc181261g00026 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc181261g00026 231 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Stsc181261g00026 231 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181261g00026 231 CDD MADS_MEF2_like 12 74 IPR033896 GO:0000977|GO:0045944
Stsc181261g00026 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc181261g00026 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc181261g00026 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc181261g00026 231 FunFam Transcription factor, MADS-box 13 83 - -
Stsc181261g00026 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181261g00026 Stsc-Chr181261 229182 245899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181261g00026 1 228 MADS-box Gene Family AT4G24540 54.386 3.51e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc181261g00026 K-box 7.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181261g00026 - - adu:107459373 334.724