Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181261g00025 ATGCCAATAACAAAAATAATAATTAGAAAAACCACTAGCTTAACTCTTGCGCATGACATGGGTGGTACCCTTTCATTGAAGCCAATATTCAACATCACATTTCCTTTTGTCCTCGTCACCGTCACCACCACCTTTACCCTCATTGACCCCTTCATCGTTGCCAATGCCGACATCTACGATTCTAGAGAAACCCCTCCAACTTTTCCCACTGACAATAATATTATATCAGCAAGAAACTCCAACGACCCAAATAGAAAATCAGAGCCATTCAAGCCAAGCACGATCATCGTGGTTAGTATCTTTGCTGCCTTGTTCTTCTTCACGTTTATTCTCCTTCTTTACATCAAACATTGTATTCGTGTTAATCATGAAAACCAATCCCATCAAGAGGGTGAGCCACTGCATAGGAATAACTCAGGCATTGATCCATTTGTTGTGGAGAAGCTCCCGATGTTTCGATTTGGATCACTAAGAGGACAAAAGGAAGGATTGGATTGTGCAGTTTGTTTAAACAGATTCGAGATTACAGATGTTCTTCGTTTGCTTCCAAAGTGCAACCATGCTTTTCATATGGATTGTGTAGACAAGTGGCTCGACGAGCATTCAACTTGCCCTCTCTGTCGCAACAGGGTGGACCCCAAAGACATCCTCACAAGGGAACAATTACTAGTACAAGAAGTGAAAGAAGGAGAAAGAGATAATGAAGCGAATCCAATAGAGGATATTGAGAGAGGAACCTTTCGGAGAGTCTCAGGGAGGCACTCATCAGTGTTGGGAGAAAGAGAAGGGGGGCTCTTGGAGATTATTACACATAATAATTCAAACGAGAAAAAGAATAAGAAAAGGAGGTCATCTAGTAGCAGGAGAAGTTTTGGTGGTTTTGTTCGGCCAAGGAAGGACAAAACATTCATCGCAAGACAAGAAGAACACCATAGGTTGGAGCACCGAATTATTATTGATTCGCCGATGGCCTTTTCCGTTATGCCTAACGGTGAAGGAGAGTCATCATCACAACCACATCATAGCTGGAATAATGAAGTTTCACCATCAAATCTTTTGTACTTAACGTCTGAGATGATAATCAGCGATGGTGCTTCTTCTACGCGTGGGCAAAGAAGACCAACTCATAGCCGCATTGTTATCAATGGGAATGAAAATAACAAGAATGAGCACATTATTATTGGGAGGGAGCAAAGAAAGAGAACATAG 1209 0.4177 MPITKIIIRKTTSLTLAHDMGGTLSLKPIFNITFPFVLVTVTTTFTLIDPFIVANADIYDSRETPPTFPTDNNIISARNSNDPNRKSEPFKPSTIIVVSIFAALFFFTFILLLYIKHCIRVNHENQSHQEGEPLHRNNSGIDPFVVEKLPMFRFGSLRGQKEGLDCAVCLNRFEITDVLRLLPKCNHAFHMDCVDKWLDEHSTCPLCRNRVDPKDILTREQLLVQEVKEGERDNEANPIEDIERGTFRRVSGRHSSVLGEREGGLLEIITHNNSNEKKNKKRRSSSSRRSFGGFVRPRKDKTFIARQEEHHRLEHRIIIDSPMAFSVMPNGEGESSSQPHHSWNNEVSPSNLLYLTSEMIISDGASSTRGQRRPTHSRIVINGNENNKNEHIIIGREQRKRT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181261g00025 402 MobiDBLite consensus disorder prediction 268 299 - -
Stsc181261g00025 402 MobiDBLite consensus disorder prediction 364 402 - -
Stsc181261g00025 402 SUPERFAMILY RING/U-box 144 214 - -
Stsc181261g00025 402 CDD RING-H2_EL5-like 165 208 - -
Stsc181261g00025 402 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Stsc181261g00025 402 MobiDBLite consensus disorder prediction 364 389 - -
Stsc181261g00025 402 FunFam RING-H2 finger protein ATL43 141 215 - -
Stsc181261g00025 402 SMART ring_2 166 207 IPR001841 -
Stsc181261g00025 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 216 IPR013083 -
Stsc181261g00025 402 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 77 377 - -
Stsc181261g00025 402 Pfam Ring finger domain 165 208 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181261g00025 Stsc-Chr181261 224785 227497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181261g00025 92 401 C3H Transcription Factor Family AT5G05810 40.346 2.03e-52 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181261g00025 K19041 - fve:101303234 228.409