Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181261g00016 ATGGAGAGAGGGAGAATTCAAGTTGGTGCTGTCCACACTGTATTTATGGACAACCTTCCGGTGACGGTAACTAAGAGAGAACTGTACAAGCTATTTGGGAGAGATGGTTATGTCTATGACATCTTTGTGTCGAGGAAAAAGCGATGGAGTATAAACAGCCCCTTTGCGTTTGTAAGGTACCAAGGTTATGAAAATGCCATGAGTGCATGTAAGAGGCTGAACGGTGTGGAATGGAGAGGAGCGAAACTAGCAATTTCTCTATCAATATATAAAAGAGAGCAGAATGATAAAAGAAAGATGCATGGAGTTGTAAATGTAAGGAAGCAGGAGCAAAAAGTGGTGAAGAAATGGGTGGCCATAAGGAAAACAAGGCATGAAGGCGATGGAAATGGTGGAAATAAGCTGGCAATGGAGGCGGTAAAGCTAAGTGGAAAAAATGAGGTAGAAGTCATTTGGTCTGTAAAATAG 468 0.4188 MERGRIQVGAVHTVFMDNLPVTVTKRELYKLFGRDGYVYDIFVSRKKRWSINSPFAFVRYQGYENAMSACKRLNGVEWRGAKLAISLSIYKREQNDKRKMHGVVNVRKQEQKVVKKWVAIRKTRHEGDGNGGNKLAMEAVKLSGKNEVEVIWSVK 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181261g00016 155 Gene3D - 7 136 IPR012677 -
Stsc181261g00016 155 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Stsc181261g00016 155 SMART rrm1_1 13 86 IPR000504 GO:0003723
Stsc181261g00016 155 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 82 IPR000504 GO:0003723
Stsc181261g00016 155 SUPERFAMILY RNA-binding domain, RBD 11 97 IPR035979 GO:0003676
Stsc181261g00016 155 CDD RRM_SF 14 86 - -
Stsc181261g00016 155 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 13 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181261g00016 Stsc-Chr181261 127272 127739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181261g00016 2 99 Eukaryotic Initiation Factors Gene Family AT1G71770 31.068 8.74e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181261g00016 K12891 - ahf:112794598 74.7146