Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181259g00045 ATGGAAGGGATATCTCCGAATTCTTCATGCACAGGGAGGACAGTGTTGGAGAAGAAAGCAAGGCCACAAGAGCAATTGAACTGTCCAAGGTGCAATTCAACCAACACAAAGTTTTGTTATTATAACAACTACAGCCTCACTCAGCCCAGATACTTCTGCAAGACTTGCAGAAGGTACTGGACTGAGGGAGGCTCTCTTAGAAACGTCCCCGTCGGTGGCGGTTCAAGGAAGAACAAGAAGATCATTTCATCATCAGCCTCATCTTCATCTTCTTTATCTTCGTCTACTTCAGCACCAAAGGTTCCAGATTTGAACCCAACTAGCCTCGCTTCCATTTCGGCCCAAAACCCTAGCAATAAAATCATGCAAGGGGGAGGGCATGATCTCAATTTGGCATTTCCATCTATGGAAAACTATCATCATCATGATCACCATCACCATCATGCCTTGTCCGCATATGTTGAGATGCCGAAACTCGAAACCGGAGGAGGTGATGGATCTTCTTCTTCTGCTGCTGCTGCTTCTCTTTCAGCGGTTGAGCTGCTAAGATCTTCTGGGATGGGTAGTACTGATACTCCTAGAGGAGGATTGAATAATATTCCTTATGTTCATTCTTCATTGATGCCAAACTTAAATTCTCTTTTCCCTTCTGGGTTTCCCATGCAAGAGATTAAGCCCAGTAGCCTTGGGTTTTCTTTGGTTGATGGGCTTGGAAGTAGGTCATCATATAACAGCAGTAATAATGGTGGAGGGCAAGTAGAGAATGATAATAATGGGAGGCTTCTGTTCCCTTTTGGAGAAATCAAACATCATCATCAGCTTTCTTCAGCGGCAGGTGTTGAACTTGACCACCAAAATAATAAAGAACAAGCTGCAGCGAACAATTCAACTGGGTTTTGGACTGGTATGATTGGTGAAGGCTCATCTTGGTAA 933 0.4405 MEGISPNSSCTGRTVLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIISSSASSSSSLSSSTSAPKVPDLNPTSLASISAQNPSNKIMQGGGHDLNLAFPSMENYHHHDHHHHHALSAYVEMPKLETGGGDGSSSSAAAASLSAVELLRSSGMGSTDTPRGGLNNIPYVHSSLMPNLNSLFPSGFPMQEIKPSSLGFSLVDGLGSRSSYNSSNNGGGQVENDNNGRLLFPFGEIKHHHQLSSAAGVELDHQNNKEQAAANNSTGFWTGMIGEGSSW 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181259g00045 310 MobiDBLite consensus disorder prediction 78 123 - -
Stsc181259g00045 310 MobiDBLite consensus disorder prediction 287 310 - -
Stsc181259g00045 310 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Stsc181259g00045 310 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
Stsc181259g00045 310 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 190 IPR045174 GO:0003700|GO:0006355
Stsc181259g00045 310 Pfam Dof domain, zinc finger 24 80 IPR003851 GO:0003677|GO:0006355
Stsc181259g00045 310 MobiDBLite consensus disorder prediction 67 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181259g00045 Stsc-Chr181259 249337 251445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181259g00045 14 310 C2C2-Dof Transcription Factor Family AT3G61850 46.405 1.76e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc181259g00045 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181259g00045 - - gmx:778110 300.827