Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181259g00044 ATGGGAAGAGCTCCTTGTTGTTCAAAAGTTGGATTGCACAGAGGTCCATGGACTCCCCGTGAAGATGCATTACTCACCCAATATATTCATTCCCATGGCGAAGGCCAATGGAGATCACTCCCTAAAAGAGCTGGGCTTCTTAGATGCGGGAAGAGTTGCAGGCTGAGATGGATGAACTATCTGAGACCCGATATCAAGAGAGGCAACATAACTCCCGAAGAAGACGACCTCATCATTCGTATGCATTCCCTCTTAGGCAACAGGTGGTCCCTCATCGCCGGCAGGTTACCTGGAAGAACTGACAATGAAATCAAGAACTACTGGAATACCCACCTCAGCAAGAAGCTCCTCAGGAATCAACAACATCCCAAGAAGAAGAAGCAGAAGAAAGGTGCAGAGAAGAAGGAGAAGACCGTTGTTTATTTACCCAAACCAATCAGAGTTACCGCTATTCCAAGAACGCAAAGCACTCTAACATTGGAATCCAATTCAGGAAGCGCTTCAACGAGTCACGAGAAACAACAACAAGAAGAACTTGCCAAAGAGGTAAATAATAATAAGGATGAGGAAGAAGTAGATGAGGAGCTTCGATTATTTCTTGGTGGCAATGGTGACCAAGTAGTCAACGGATGTGATGACGTGGAAGGCGAATCATGTGATTTTCTTGGGGACTGTGAACCGTTAGAGAAGCTGTATGAAGAATACCTTCAGCTGTTGAACACGGATAATAATGCCAACCCACACCAATTCGATTCTTTTGCTGAATCTTTTCTACTCTGA 780 0.4487 MGRAPCCSKVGLHRGPWTPREDALLTQYIHSHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLLRNQQHPKKKKQKKGAEKKEKTVVYLPKPIRVTAIPRTQSTLTLESNSGSASTSHEKQQQEELAKEVNNNKDEEEVDEELRLFLGGNGDQVVNGCDDVEGESCDFLGDCEPLEKLYEEYLQLLNTDNNANPHQFDSFAESFLL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181259g00044 259 SMART sant 13 63 IPR001005 -
Stsc181259g00044 259 SMART sant 66 114 IPR001005 -
Stsc181259g00044 259 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc181259g00044 259 FunFam Myb transcription factor 11 67 - -
Stsc181259g00044 259 CDD SANT 16 61 IPR001005 -
Stsc181259g00044 259 Coils Coil 172 193 - -
Stsc181259g00044 259 MobiDBLite consensus disorder prediction 174 191 - -
Stsc181259g00044 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc181259g00044 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc181259g00044 259 FunFam Transcription factor TT2 70 140 - -
Stsc181259g00044 259 MobiDBLite consensus disorder prediction 115 138 - -
Stsc181259g00044 259 Gene3D - 71 140 - -
Stsc181259g00044 259 Gene3D - 14 66 - -
Stsc181259g00044 259 MobiDBLite consensus disorder prediction 152 173 - -
Stsc181259g00044 259 CDD SANT 71 112 IPR001005 -
Stsc181259g00044 259 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc181259g00044 259 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc181259g00044 259 MobiDBLite consensus disorder prediction 117 132 - -
Stsc181259g00044 259 MobiDBLite consensus disorder prediction 152 191 - -
Stsc181259g00044 259 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc181259g00044 259 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc181259g00044 259 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181259g00044 Stsc-Chr181259 240347 241275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181259g00044 1 239 MYB Transcription Factor Family AT4G09460 45.749 8.16e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc181259g00044 Myb_DNA-binding 6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181259g00044 K09422 - gmx:778044 319.701