Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181259g00043 ATGGATATCCATGGTGAGGTGGCAAAGGCAGCGAGGAGGCATCAACCTTGCGCAGCTTGCAGGATGTTACGGCGGAGATGTGACAGTAAGTGCCTTCTTGCTCCCTTTTTCCCACCTGAAGACGTTCACAAATTTCTTGGAGTGCATAGAGTTTTCGGTGCAAGCAACGTTATCAAGATGATTCAGGTGGTTGAGGAGACAAAGAGAGAGGATGCTGTGAAAGCGATGGTTTACGAGGCGAAGGCAAGGCTTAGAGATCCCGTTTATGGCAGCACTGGAGCTATTTTGCAGTTGCAAAAGATGATCGAGGAATTGAAACAACAGCTAGAATCAATTAGATCTCGAGTATTTGAGCTGCAACAGCAGAAGGAGCACTACTTGTTCATGATGGTTCATAATAACCATAATAACAACACTAATACTACTTATGATGAGAATAATAGTAATGACCCTATCTTTCAAGGCTATTATCGTACTTTGTCATCATCAGATCTCATGGCCTATGATGAATTTCCTGTACAATAA 525 0.4286 MDIHGEVAKAARRHQPCAACRMLRRRCDSKCLLAPFFPPEDVHKFLGVHRVFGASNVIKMIQVVEETKREDAVKAMVYEAKARLRDPVYGSTGAILQLQKMIEELKQQLESIRSRVFELQQQKEHYLFMMVHNNHNNNTNTTYDENNSNDPIFQGYYRTLSSSDLMAYDEFPVQ 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181259g00043 174 Pfam Lateral organ boundaries (LOB) domain 16 112 IPR004883 -
Stsc181259g00043 174 Coils Coil 95 122 - -
Stsc181259g00043 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 143 - -
Stsc181259g00043 174 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181259g00043 Stsc-Chr181259 235400 236136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181259g00043 16 147 AS2 family AT1G07900 47.407 6.75e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc181259g00043 LOB 2.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181259g00043 - - ccaj:109796546 205.682