Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181259g00040 ATGGCGCATCCCACTTCTACGGCTCAAACAGGCGAGGGAGATGACTCTATCTACACATACCAATGGAAGCTCTGTGCTGGCCCTACCGTCGACGTTCCCCGCACCGGAGAGAGAGTATACTACTTCCCCCAGGGTCACATGGAACAATTACAAGCATCAACGAATCAGGAATTGAGTCAGCAAATCCCTCATTTCAATCTCCCAACCAAGATTCTATGCCGTGTTGTTCACATTCAGTTGCTGGCGGAACAGGAAACTGATGAAGCTTATGCCCGTATCACTTTGCTTCCAGAACCAGATCAAAAAGAGCCTACAAGCCCTGATCCAAGTCCTGTGGAATCCCAAAAAGAAAAGTTTCACTCTTTTACCAAGATATTGACTCCCTCTGATACTAGCACACATGGAGGATGTTCAATTCGTCGTATGCATGCCACAGAGTGCCTACCTCCATTGCCATCACCTCCTCCGGATTCGGATGAAAATTCCCCACCACCATCCCAAGAATTGGTGGCCAAGGATCTTCATGGATTCGAGTGGAAGTTTAAGCATGTATTAAGAGGTTCACCAAAGAGGCACTTGTTCACAACTGGCTGGAGCACCTTTGTCACTTCCAAAAGACTGGTTGCTGGAGATGCTTTTGTCTTTTTAAGGGGAGAAGATGGGGAAATGAGAGTTGGGATTAGGCGTCTTGCACGGCAGCAGAGCCCGATGCCTTCATCCGTGATATCAAGCCAGAGCATGCTTCTTGGAGTGCTTGCCACTGCTTCTCATGCTGTTATGACTCGCACCATGTTTGTGGTTTACTATAAACCAAGGAGTAGCCAGTTTATTATTGGCCTTAACAAATATCTGGAAGCTGTCAAACATAAATTTAGTGTTGGAATGCGTTACAAGATGAGATTTGAAGTGGAAGAATCACCTGAGAGAAGATTTTCTGGTACTATTGTTGGGGTTGGGGATGTATCTCCAGGATGGTCAAACTCTCAATGGCGTTCCTTGAAGGTTCATTGGGATGAGCCTGCAACGTTTCCAAGACCAGAGAGGGTTTCTTCATGGGAGATTGAGCCTTTTGTGGCTTCTACTGCCTTGACCAAAAGGCCCAGGCATGCTGATCATATTTCATCATCTGAAATTGCTTCCAACCCTCCTGCTTCAGCTTTCTGGTTTCATGGATCATCCATCTCCCATGAGCCTACACAGTTAGGTGGTGGTGCTGAAGTCCAAAGCAAGGAAAAGCAGGTTGTATGGTCGTTGAGGCAGAAAGAAACCAATGGAAATCCCATGAATAGCCACTCCAGCAGCTCTCGGGTCCGTATGGAAGGAATATGGTCTAATTCACCACATGCCAATGCCCCACCAAATCCCCAAAACAACAATGCTGCTGCTAAACAATGCCCCTCTCCTATTTCATCTAAACTATATGATGATAGTTTGACTCATGAAAAAGTTGGAGTAGATGGTAAAAACAAGACTGAGAATCCCTCAAAGTTCTTTTTATTTGGAGTTAATTTGAGTACCAAGGTCAGTAGTAATGTTTCCCTTCCGGAAAAAGAACAAGCATGCTCTGCCATTATTCCCATTGGTCCCAAAGAATCTGCCACTGAGGAGGCTCAGAATTCCAACAATTCAGTGTCTGATAAGGAGCAGCAGAACCAAATTATTTCTGATGCATTGCCAACACAGAAGCCTAGCAAGCTGGCATCCGTACCATCCATGAGGACTCGAACTAAGGTGCAAATGCAAGGTGTGGCTGTAGGGAGAGCTGTGGACTTAACCATATTGAATGGTTATGAAGAGCTTATAGATGAGCTTGAGAAACTGTTTGATCTTGGGGGAGAACTTAGATCTCAGAACAAATGGGCAGTTACTTTTACTGATGATGAAAATGACATGATGCTTGTTGGTGATGATCCATGGCCGGAGTTCTGCAACATTGTGAAGAGGATTTACATTTATTCAAGGGAGGATGTGAAGAAGATGAAATACAAGCTCTCTGGGCCTTCGTCCGATTGCGAAGAGACTTTGTTGACGAAGGATGAGACTCAAAAAGTCTCATCTGCTTAG 2064 0.4516 MAHPTSTAQTGEGDDSIYTYQWKLCAGPTVDVPRTGERVYYFPQGHMEQLQASTNQELSQQIPHFNLPTKILCRVVHIQLLAEQETDEAYARITLLPEPDQKEPTSPDPSPVESQKEKFHSFTKILTPSDTSTHGGCSIRRMHATECLPPLPSPPPDSDENSPPPSQELVAKDLHGFEWKFKHVLRGSPKRHLFTTGWSTFVTSKRLVAGDAFVFLRGEDGEMRVGIRRLARQQSPMPSSVISSQSMLLGVLATASHAVMTRTMFVVYYKPRSSQFIIGLNKYLEAVKHKFSVGMRYKMRFEVEESPERRFSGTIVGVGDVSPGWSNSQWRSLKVHWDEPATFPRPERVSSWEIEPFVASTALTKRPRHADHISSSEIASNPPASAFWFHGSSISHEPTQLGGGAEVQSKEKQVVWSLRQKETNGNPMNSHSSSSRVRMEGIWSNSPHANAPPNPQNNNAAAKQCPSPISSKLYDDSLTHEKVGVDGKNKTENPSKFFLFGVNLSTKVSSNVSLPEKEQACSAIIPIGPKESATEEAQNSNNSVSDKEQQNQIISDALPTQKPSKLASVPSMRTRTKVQMQGVAVGRAVDLTILNGYEELIDELEKLFDLGGELRSQNKWAVTFTDDENDMMLVGDDPWPEFCNIVKRIYIYSREDVKKMKYKLSGPSSDCEETLLTKDETQKVSSA 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181259g00040 687 FunFam Auxin response factor 120 231 - -
Stsc181259g00040 687 MobiDBLite consensus disorder prediction 419 438 - -
Stsc181259g00040 687 MobiDBLite consensus disorder prediction 145 168 - -
Stsc181259g00040 687 SUPERFAMILY DNA-binding pseudobarrel domain 112 258 IPR015300 -
Stsc181259g00040 687 Gene3D - 290 362 - -
Stsc181259g00040 687 ProSiteProfiles PB1 domain profile. 573 656 IPR000270 GO:0005515
Stsc181259g00040 687 Gene3D - 119 230 IPR015300 -
Stsc181259g00040 687 MobiDBLite consensus disorder prediction 443 473 - -
Stsc181259g00040 687 Gene3D - 569 661 - -
Stsc181259g00040 687 MobiDBLite consensus disorder prediction 533 550 - -
Stsc181259g00040 687 MobiDBLite consensus disorder prediction 96 119 - -
Stsc181259g00040 687 Pfam B3 DNA binding domain 122 229 IPR003340 GO:0003677
Stsc181259g00040 687 MobiDBLite consensus disorder prediction 528 550 - -
Stsc181259g00040 687 Pfam Auxin response factor 255 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc181259g00040 687 ProSiteProfiles B3 DNA-binding domain profile. 122 231 IPR003340 GO:0003677
Stsc181259g00040 687 MobiDBLite consensus disorder prediction 148 162 - -
Stsc181259g00040 687 CDD B3_DNA 120 229 IPR003340 GO:0003677
Stsc181259g00040 687 FunFam Auxin response factor 568 661 - -
Stsc181259g00040 687 Coils Coil 530 550 - -
Stsc181259g00040 687 SMART B3_2 122 231 IPR003340 GO:0003677
Stsc181259g00040 687 Pfam AUX/IAA family 617 655 IPR033389 -
Stsc181259g00040 687 Pfam AUX/IAA family 552 609 IPR033389 -
Stsc181259g00040 687 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 661 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc181259g00040 687 MobiDBLite consensus disorder prediction 665 687 - -
Stsc181259g00040 687 FunFam Auxin response factor 290 361 - -
Stsc181259g00040 687 SUPERFAMILY CAD & PB1 domains 567 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181259g00040 Stsc-Chr181259 219863 223857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181259g00040 13 660 B3 DNA Binding Superfamily AT4G23980 52.584 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc181259g00040 AUX_IAA 3.8e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181259g00040 K14486 - gmx:100820503 844.343