Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181259g00036 ATGGAGGTGGGGATGGGGATGGGGCGCGTGGTTTGGGACGACGACGATAAAGCCACAGTGGCGGCGGTTCTGGGAGCACGCGCTTTCGAATTCTTGGTGACGAACGCGGTATCCAATGAGAACCTCTTAGTGGCAGTTGGGAGCGACGAGAGCTTACAGAACAAGCTTTCCGATCTGGTGGACCGTCCAAACCTCTCCAATTTCAGTTGGAACTACGCCATTTTCTGGCAGTTATCTCAGTCCAAATCCGGCGACTGGGTTCTCGGATGGGGAGACGGTTCCTGCAGGGAGCCCAACGATGCCGAAGAAGGCTTCGGAGGGATTCTCAGTCTCCGCATCGACGACGAGATGCAGCAGAGGATGAGGAAGAAGGTTTTGCAGAAGCTACACACTACCTTCGGTGGCTCCGACGAGGACAATTACGCTTTTGGCCTCGACAGGGTCACGGACACCGAGATGTTCTTTCTTGCGTCCATGTACTTCTCGTTCCCCCGCGGCCATGGTGGTCCAGGTAAGTGCTTTGCGTCCGGGAAGCACCTCTGGCTCTCGGACGCCATGAAATCAAACTCTGATTACTGCGTGCGCTCTTTCTTGGCTAAAAACGCTGGCTTTCAGACTATTATTTTGGTTCCTACTGATTTGGGAGTCTTGGAGTTGGGTTCAGTGAGGGCTCTGCCTGAGAATTTTGAGCTGTTGCAGGCCATCAAATCTGTGTTTTCCTCCCAGGCAACCGCCGCCTACCCAATGGCTAACAATAAGCCTCTTTTGCCATTGCCGGTTATGAGTGAAAAGAGGGATGAGAATTGTAAGGCTCTTTTTCCTGGTTTGGCAATCGGGGACCATACTCACCATAACAATAACAAGGTTGTTGAGGGAGTGCCAAAGGTTTTTGGAACCGCTGTGAATTCTGGTAGGTCCCATTTCAGGGAGAAGCTTGCTATTAGGAAGATGGAGGAGAGGCCTTGGGTAGCCCACCACCAACCCAATGGGAACAGTAATGGCAATGCCATCAACTTTCCGAATGGTCCTCCTCGGAATGGTGGTATTCATCACGGGTCTGCTTGGGTTGGTGGAGCAGCAGCAGCAGCAGTTGGAGTGAACAATAATACTAGTAACTGTAATAATCATCATGCTCAAGGTGGGGTGAGGCAGGCTGCTGCTGGTGGCGCTGCTGAGATTTTTGCACCTAGGTCGTCCACAAGCAATGTGGCTGCCGAGTTGGCTAACGGGGGTGTGAGGCCGCAGGATTTTAGGATTAGCAGCTATCAACCCCAAAGGCAGGTGCAAATGCAGATTGATTTCTCCGGAGCCACTTCCAGCAGAAGGCCCGTGGTTGCCGATTCGGAGCTTTCTGATGTTGAGGCCTCATGCAAGGAGGAACAGCCGAGCACGGCTGACGAGAGGAGGCCCAGGAAGCGGGGAAGGAAGCCTGCTAATGGTAGGGAGGAACCCCTCAATCATGTGGAAGCGGAGAGGCAGAGGCGAGAGAAGCTCAACCAGAGGTTCTATGCGTTGCGGTCTGTGGTGCCCAATATATCCAAGATGGACAAGGCGTCGTTGCTTGGTGACGCCATTGCCTACATCAATGAGCTCCAAGCAAAGCTAAAGATGATGGAGTCCGAGAGGGAGAGACATGGAGGAAGCACTTCTTTCAGGGAGCCGGAGGCAATGCAAAGAGCGGCGGAAACTCACCGCTGTGGTGGAGATGCAGATGTGGATATTGAAGCAGCACAGGATGAGGTGATTGTTAGGGTGAGTTGCCCTCTTGATGCTCATCCGGTTTCAAGAGTGATCCAAACATTCAAAGAGGCACAAATCAGTGTTGTTGATTCAAAACTGGCAGCTGCAAATGACACCATATTTCACACCTTTGTAATTAAGTCCCAACAAGGATGTGAACAGCTCACAAAGGACATGTTGATTGCAGCACTCTCCTCAGAATCCAATTCTTTACAGCAATTGTCATCTGTTGGTGGGTAG 1980 0.5192 MEVGMGMGRVVWDDDDKATVAAVLGARAFEFLVTNAVSNENLLVAVGSDESLQNKLSDLVDRPNLSNFSWNYAIFWQLSQSKSGDWVLGWGDGSCREPNDAEEGFGGILSLRIDDEMQQRMRKKVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWLSDAMKSNSDYCVRSFLAKNAGFQTIILVPTDLGVLELGSVRALPENFELLQAIKSVFSSQATAAYPMANNKPLLPLPVMSEKRDENCKALFPGLAIGDHTHHNNNKVVEGVPKVFGTAVNSGRSHFREKLAIRKMEERPWVAHHQPNGNSNGNAINFPNGPPRNGGIHHGSAWVGGAAAAAVGVNNNTSNCNNHHAQGGVRQAAAGGAAEIFAPRSSTSNVAAELANGGVRPQDFRISSYQPQRQVQMQIDFSGATSSRRPVVADSELSDVEASCKEEQPSTADERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKLKMMESERERHGGSTSFREPEAMQRAAETHRCGGDADVDIEAAQDEVIVRVSCPLDAHPVSRVIQTFKEAQISVVDSKLAAANDTIFHTFVIKSQQGCEQLTKDMLIAALSSESNSLQQLSSVGG 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181259g00036 659 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 485 547 IPR036638 GO:0046983
Stsc181259g00036 659 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 482 531 IPR011598 GO:0046983
Stsc181259g00036 659 Coils Coil 528 548 - -
Stsc181259g00036 659 PANTHER MYC 29 643 IPR045084 GO:0003700|GO:0006355
Stsc181259g00036 659 FunFam Transcription factor bHLH13 475 548 - -
Stsc181259g00036 659 Gene3D - 475 545 IPR036638 GO:0046983
Stsc181259g00036 659 MobiDBLite consensus disorder prediction 452 493 - -
Stsc181259g00036 659 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 239 IPR025610 -
Stsc181259g00036 659 SMART finulus 488 537 IPR011598 GO:0046983
Stsc181259g00036 659 Pfam Helix-loop-helix DNA-binding domain 486 532 IPR011598 GO:0046983
Stsc181259g00036 659 MobiDBLite consensus disorder prediction 434 493 - -
Stsc181259g00036 659 CDD bHLH_AtAIB_like 479 544 - -
Stsc181259g00036 659 MobiDBLite consensus disorder prediction 327 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181259g00036 Stsc-Chr181259 169336 171315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181259g00036 5 658 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.792 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181259g00036 bHLH-MYC_N 2e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181259g00036 - - adu:107491937 1142.87