Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181259g00033 ATGGATTTGGAACCCGAAACTCGACGTAAAATCGAGGACATGGTGCTGGATTTACTCAAGCAATCCAACATAGAAGAGACTACTGAATTCAGCATCCGAGTCGCCGCCTCCGAGCGACTCGGCATCGATCTCTCCGACCCCCACCGCAAGCAGCTCGTCAGAAATGTGGTCGAGTCTTATCTTCTAGCCTTCGCTGCCGAAGACGCCACCGTTGTAGCAGAACAGAAACCGCCGGAACTTATCGCTGCTCCGGAGGAGCCCACAGAAGCGGCGTTACAGTTACCGAAGCCAATCTGCGAAGTTAAGGATGACTGTGACCGTGACCACGTCATTTTCCAGCTGTCAAACAAGAGGAATGTGGTGGTTAAAAAGTTCAAAGGGACAACATTGGTGTCCATTAGGGAGTTTTTCCAGAAAGATGGAAAACAGATTCCTACTTCTAAAGGGATAAGTTTATCATCTGAACAATGGTCAACCTTCAAGAAGAATGTGCCAGCTATAGAGGAAGCTATTGCAAAGATGGAAGGAAGGATTAAATCTGAGCTTCATGGTAGGCAAAATGGAGATTTGTGTAACTCAAGTGTTGATGTGACTCCCCTTGAGCATGTCCCTGTTGAGGTCAGCCGTTTTGATGGGAAAAATTATCAATTATGGGCTCAGCAGATGGAATCACTTTTGAAGCAGCTAAAGATTGATTATGTGCTTACTGAACCAAGCCCAAATGCCGTGCTTGGTGAAAATTCTAGTGCTGAAGAAATTGCTAGAACCAAAAATGCAGAAAGGAGATGGGTGAATGATGATTTAATGTGCCGCCGCAATATCTTGACCCATTTATCTGATAGTCTATTTGGTCTCTACGCAAACAGAAAAATGAGTGCTAAGGAGTTATGGGAAGATTTAAAATTGGTTTATCTGTATGAGGAACATGGAAGCAAGAGAGAGCAAGTGAAAAAGTATCTTGAGTTTCAGATGGTAGACAAGAGAGCAATTGTTGAGCAAACCCTAGAATTTAATAGCATCGCAGATTCACTTGTTTCTGCTGGAATGTTTCTGGATGAAAACTTTCATGTGAGTGCCATCCTTTCAAAGCTTCCACCATCCTGGAAGGACTTCTGCATCAAGTCAATGCGTGAGGAGTATCTTCCTGTATGGAGGCTAATTGATTGTATACGGATGGAGGAAGAATCTCGCAAAGGATTCAAACGAGTTGGTGAACCTTATATTCGGAATAGGTTCCCACCAGGTATGCATAGGAATAAGTCAGATAGTAATGGCAAGAGCATATCCTGTTATATTTGTGGGAAGAAGGGGCATCTTTCTAAACACTGCCGGAGAAGATTTGACAAACAAGCTAATGAAAGACAGGCAGAAGATGTGTGTATACCTCAAGAAGTTAACATGGTGGGGGGTTATTAG 1416 0.4357 MDLEPETRRKIEDMVLDLLKQSNIEETTEFSIRVAASERLGIDLSDPHRKQLVRNVVESYLLAFAAEDATVVAEQKPPELIAAPEEPTEAALQLPKPICEVKDDCDRDHVIFQLSNKRNVVVKKFKGTTLVSIREFFQKDGKQIPTSKGISLSSEQWSTFKKNVPAIEEAIAKMEGRIKSELHGRQNGDLCNSSVDVTPLEHVPVEVSRFDGKNYQLWAQQMESLLKQLKIDYVLTEPSPNAVLGENSSAEEIARTKNAERRWVNDDLMCRRNILTHLSDSLFGLYANRKMSAKELWEDLKLVYLYEEHGSKREQVKKYLEFQMVDKRAIVEQTLEFNSIADSLVSAGMFLDENFHVSAILSKLPPSWKDFCIKSMREEYLPVWRLIDCIRMEEESRKGFKRVGEPYIRNRFPPGMHRNKSDSNGKSISCYICGKKGHLSKHCRRRFDKQANERQAEDVCIPQEVNMVGGY 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181259g00033 471 FunFam RNA polymerase II transcriptional coactivator KELP 102 175 - -
Stsc181259g00033 471 ProSiteProfiles Zinc finger CCHC-type profile. 430 445 IPR001878 GO:0003676|GO:0008270
Stsc181259g00033 471 Pfam gag-polypeptide of LTR copia-type 263 398 - -
Stsc181259g00033 471 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 5 177 IPR045125 GO:0003713|GO:0060261
Stsc181259g00033 471 Pfam DEK C terminal domain 7 61 IPR014876 -
Stsc181259g00033 471 Gene3D - 382 459 - -
Stsc181259g00033 471 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 5 62 IPR014876 -
Stsc181259g00033 471 Pfam Transcriptional Coactivator p15 (PC4) 112 163 IPR003173 GO:0003677|GO:0006355
Stsc181259g00033 471 SUPERFAMILY ssDNA-binding transcriptional regulator domain 111 173 IPR009044 GO:0003677|GO:0006355
Stsc181259g00033 471 Gene3D Transcriptional Coactivator Pc4; Chain A 102 180 IPR009044 GO:0003677|GO:0006355
Stsc181259g00033 471 SMART c2hcfinal6 429 445 IPR001878 GO:0003676|GO:0008270
Stsc181259g00033 471 SUPERFAMILY Retrovirus zinc finger-like domains 415 451 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181259g00033 Stsc-Chr181259 157279 160133 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Stsc181259g00033 Retrotran_gag_2 9.5e-14 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181259g00033 - - gmx:100800963 548.125