Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181259g00031 ATGACGGAGCCACCGTCGGATAGGCGGTGTAAGCGCACCGCCGGCCCAAAGTGGCGATGCAGCGAGGTGCAGTTGCCGGGGAAATCGTTCTGCGAGAAGCACTTGCAGCAGCTTGCGATTCAAAAGCAGAACAGAATTAAGAGGAAGGAATCGGAGCGCAGGTCCAACAAGACCAAGAGGAGGTCATCGATTGCCGATGACGGATCCGAATTGGAAGTTTCCGAGTCCGAATTGATTGAGAACTCCGTCACAAAGCAAAGCCTGAAGCAGAACAAGACGAAGAAGAAGAAACTACTTGATCAAGGGAATGACAATGATTGTGGTCTTCATGAGGACTCTAATAGGGGACTGATGAGCGTGTACCGTGTCAAGAAGGGTTCAGAAGTTGAACATAGCAAAAAAATGGTTTCATCCAGCAAAAGCAGGGAGGGTGGAAGTTTGATGTGTCATCAATGCCAGAGGAATGATAAGAGTGGCGTTGTCTTTTGCTCAAGCTGCAACAAAAAACGCTACTGTTATGAATGCCTTGACAAGTGGTACCCAGGTAAAACCCGGGAGGAAGTTGGGAATGCATGTCCATTCTGTTCTGGCAATTGCAACTGCAAAGCCTGCTTGCGGGAGGTTCCAGTGCCTAAGGACCGAGAGGTAAATGCCAGTGTCAAATTAAACCGGCTGCTCTACTTAGTCTATAAAGCCTTGCCAGTTCTGAGGCAGATTCACAGGGAGCAAAGCTTAGAACTAGAGATTGAAGCCCAAATAAAAGGTGTTCAGCTGCAAGAAAAAAATATAGCAAGAACACGGCTAGACACACGTGAGCGCTTATACTGTGACAATTGCAATACATCAATAATTGGGTTTTACCGGAGCTGTCCCAATCCCAGTTGCTCTTATGATCTATGTCTCATGTGTTGTCAAGAGCTTAGGGAGGGTTGCCAACCTGGAGGCATAGAAGCTGAAACATCCCAGGAACAATTTTCCGAGAGAGCTCGTAACCATGATTCACCAAGAACTAAGAGTAAAGAACAAAGAAAAAGATATGGATGGGAGGGTCAGGTTGTGCCTACAAATTTTGATTTTCAAGCTGACATGTCCACCCCCTTCCCTGAATGGCATGCTAATACAGATGGTAACATTCCTTGTCCACCGAAACAACGCGGAGGTTGTGGTACTGCATTACTAGAATTGAAACGTACTTTCAAAGCTAATTGGGTAGTGAAATTGCTAAATAATGCTGAGGACCTCACCAGAGACTACACACCACCTGATATTGATATTACCGAAAAGTGCTCATTATGTCAGAAAAATACTATTGAAGGAAAAACCAACCTTGAAGTTCGGAGGGCAGCATTCAGGGATGACGATAATGATAATTTCATATATAGCCCAAATGCCCTTGATATTTCTGATGATGAGATTGAGCATTTCCAGAGGCACTGGATGAGGGGAGAACCTGTTGTTGTGAGAAACGTTCTCGATAAGACATCAGGTCTTAGCTGGGAGCCAATGGTTATGTGGAGGGCTTTAAGGGAAACAGGCTCCAAAGTGAAGTTTAAAGAGGAAACTCGAAGTGTAAAAGCTATTGATTGCTTTGATTGGTGTGGGGTTGAGATCAATATTCATCAATTTTTCCAAGGATACCTAGAGGGACGGATGTATAAAAATGGGTGGCCAGAAATGTTGAAATTGAAAGATTGGCCCTCATCAACCAGTTTTGAAGAGCGCTTGCCCAGGCATGGCATGGAGTTCCTCATGGCACTCCCCTACAGGGATTACACTGATCCAAAATTCGGGACTTTGAATTTTGCATCCAAACTTCCTGATGACTCACTGAAGCCAGATTTAGGACCCAAAACATATATTGCTTATGGATTTTCTGATGAGCTTGGTAGAGGAGATTCTGTGACAAAGCTGCATTGTGACGTGTCTGATGCAGTCAATGTGCTGACTCATACTACCAATGTGAAGATAGCTCCTTGGCGGAGAGAAATAATAAAAGAACTGCAGAAGAAATATGCTGAAGAAGACTCTCGTGAACTTTTATGTGAAGCTTTAGGAGATGATGATGAAATACCTAAATCTGAAGCATTGAAAGATGATCAGAAGACAGAGAAAGGAACNNNNNNNNNNGTGGATCAGTGCATTCCATCTATAGCTGAAGGCAAGAGTCAGAAGTTAGAAACACATGATCTATCTGCAAGTAGCTTAACTAGTAATATGAGCATTAAGGAAGAAAGAATGGAGATTGATTTTACAGATGATAAGATGCCTGCTGATGCTGAGCTGAGAGAGTCAAAACAAGGCCTGGAGAAAGAATCTTTGAAAACTGAAAATGGAGATGAGGTTCCCCTCGGTGGTGCTGTTTGGGACATCTTCCGCCGGCAAGATGTCCCTAAGCTAATTGAGTACTTAAGAAAGCACAAGAATGAATTCCGTCACATTAAAAATCATCCTGTAGAATCTGTTATACATCCTGTTCATGATCAGACTCTGTTTTTAACTGAGAGGCATAAGAAACAGCTGAAAAAGGAGTTCAATGTTGAACCCTGGACCTTTGAGCAAAACCTTGGGGAGGCTGTCTTCATTCCAGCAGGATGTCCTCACCAAGTGAGAAACAGACAATCTTGTATAAAGGTTGCTCTTGATTTCGTTTCTCCGGAAAATGTTGGAGAATGTTTGCGACTAACTGAAGAGTTTCGGTTGCTCCCAAAACACCACAGAGCCAAGGAGGACAAATTGGAGGTTAAGAAGATGACGCTTTATGCTGTCAGTAATACATTTAGACAAGTCAAAGAAATGATACCCGTCAACGAGTTCACTGTACGGACATAA 2829 0.4341 MTEPPSDRRCKRTAGPKWRCSEVQLPGKSFCEKHLQQLAIQKQNRIKRKESERRSNKTKRRSSIADDGSELEVSESELIENSVTKQSLKQNKTKKKKLLDQGNDNDCGLHEDSNRGLMSVYRVKKGSEVEHSKKMVSSSKSREGGSLMCHQCQRNDKSGVVFCSSCNKKRYCYECLDKWYPGKTREEVGNACPFCSGNCNCKACLREVPVPKDREVNASVKLNRLLYLVYKALPVLRQIHREQSLELEIEAQIKGVQLQEKNIARTRLDTRERLYCDNCNTSIIGFYRSCPNPSCSYDLCLMCCQELREGCQPGGIEAETSQEQFSERARNHDSPRTKSKEQRKRYGWEGQVVPTNFDFQADMSTPFPEWHANTDGNIPCPPKQRGGCGTALLELKRTFKANWVVKLLNNAEDLTRDYTPPDIDITEKCSLCQKNTIEGKTNLEVRRAAFRDDDNDNFIYSPNALDISDDEIEHFQRHWMRGEPVVVRNVLDKTSGLSWEPMVMWRALRETGSKVKFKEETRSVKAIDCFDWCGVEINIHQFFQGYLEGRMYKNGWPEMLKLKDWPSSTSFEERLPRHGMEFLMALPYRDYTDPKFGTLNFASKLPDDSLKPDLGPKTYIAYGFSDELGRGDSVTKLHCDVSDAVNVLTHTTNVKIAPWRREIIKELQKKYAEEDSRELLCEALGDDDEIPKSEALKDDQKTEKGTXXXVDQCIPSIAEGKSQKLETHDLSASSLTSNMSIKEERMEIDFTDDKMPADAELRESKQGLEKESLKTENGDEVPLGGAVWDIFRRQDVPKLIEYLRKHKNEFRHIKNHPVESVIHPVHDQTLFLTERHKKQLKKEFNVEPWTFEQNLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENVGECLRLTEEFRLLPKHHRAKEDKLEVKKMTLYAVSNTFRQVKEMIPVNEFTVRT 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181259g00031 942 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 43 931 IPR045109 GO:0032454|GO:0033169
Stsc181259g00031 942 MobiDBLite consensus disorder prediction 322 345 - -
Stsc181259g00031 942 Pfam WRC 7 44 IPR014977 -
Stsc181259g00031 942 SUPERFAMILY Clavaminate synthase-like 472 917 - -
Stsc181259g00031 942 MobiDBLite consensus disorder prediction 43 68 - -
Stsc181259g00031 942 Gene3D Cupin 717 908 - -
Stsc181259g00031 942 Gene3D Cupin 463 706 - -
Stsc181259g00031 942 ProSiteProfiles Zinc finger RING-type profile. 149 196 IPR001841 -
Stsc181259g00031 942 Pfam JmjC domain, hydroxylase 783 882 IPR003347 -
Stsc181259g00031 942 MobiDBLite consensus disorder prediction 40 69 - -
Stsc181259g00031 942 ProSiteProfiles WRC domain profile. 4 51 IPR014977 -
Stsc181259g00031 942 ProSiteProfiles JmjC domain profile. 594 899 IPR003347 -
Stsc181259g00031 942 MobiDBLite consensus disorder prediction 323 345 - -
Stsc181259g00031 942 SMART cupin_9 575 899 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181259g00031 Stsc-Chr181259 148437 155148 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc181259g00031 JmjC 9.6e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181259g00031 K15601 - cave:132187182 1108.59