Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181259g00028 ATGCAGTGTCACAATGGGCATACCCTTTGTTCAACTTGTAAGACAAGGGTGCACAACCGGTGCCCGACTTGCAGACAGGAACTCGGCGACATAAGGTGTCTGGCATTGGAGAAGATAGCAGAATCACTTGAACTTCCTTGCAGATACATCTCTCTTGGTTGTCCAGAGATATTTCCATATTACAGCAAACTCAAACATGAGGCTATTTGTAACTTCAGACCATACAACTGCCCTTATGCTGGCTCCGACTGCTCTGTGGTCGGAGATATTCCTTATCTTGTCGCTCATTTAAGAGATGATCACAGGGTTGATATGCATTCTGGGTGCACCTTCAACCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCTACTTGGATGCTAACAGTTTTCCACTGTTTCGGCCAGTATTTCTGTCTCCATTTTGAAGCATTCCAGCTTGGTATGGCTCCAGTTTACATGGCATTCCTCCGGTTCATGGGAGACGAAAGAGAGGCCCGTAACTACAGCTACAGCCTGGAGGTAGGAGGAAACGGTCGCAAACTAACCTTCGAGGGGAGTCCAAGAAGCATCAGAGATAGCCACAAGAAAGTGCGAGACAGCCACGACGGCCTCATTATATACCGTCACATGGCACTCTTCTTCTCGGGTGGGGACAGGAAAGAGTTGAAGCTGAGAGTGACAGGAAGAATATGGAAAGAACAGCAGAACCCCGATGGTGGAGTGTGCATTCCCAATCTGTGTACCTAA 756 0.4749 MQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRHMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCT 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181259g00028 251 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 102 230 IPR008974 GO:0005515
Stsc181259g00028 251 FunFam E3 ubiquitin-protein ligase SINAT5-like 98 230 - -
Stsc181259g00028 251 CDD Sina 103 231 - -
Stsc181259g00028 251 FunFam E3 ubiquitin-protein ligase SINAT3 39 97 - -
Stsc181259g00028 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 97 IPR013083 -
Stsc181259g00028 251 ProSiteProfiles Zinc finger SIAH-type profile. 42 102 IPR013010 GO:0008270
Stsc181259g00028 251 SUPERFAMILY TRAF domain-like 42 234 - -
Stsc181259g00028 251 Pfam Seven in absentia protein family 31 230 IPR018121 GO:0005737|GO:0006511|GO:0007275
Stsc181259g00028 251 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 2 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181259g00028 Stsc-Chr181259 133645 135024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181259g00028 2 237 C3H Transcription Factor Family AT2G41980 79.237 8.77e-144 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181259g00028 K04506 - gmx:100792687 533.487