Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181259g00025 ATGATAATAAAGCGCAGCTTGAAAACCCAAATCCACACCCTCAAACCCTGTAATAACCAAACACAATCCAAGAAACGCAAACTCAACCAACTTTACACTCAACCCAATCCAACGCCACCTCTTATTCCACGCCAATTGACTTTCCCTCCTGTTTCAAAATCACCTCACCTCAATCATGATCCGTTGCGCTCACCGCGACGCCGCACTAGGATTCTTCCCTCCAGGTTCAGCGATTCTATTCTTGACACGTGGACGCACGCTCATGAAGAAACCAGAATCCCGTTTCTGAAGCAGAAGATCAATAACACCGCCGAATCTGAATCTGAATGGGCTGCCACGGCCTTGAATGGTTCGGACTACGACAACTGTCTCAATTCAGTTAAGACAGTTAAAACAAGTGTTAACGGAGTCCGTTCTACTCTCGTTAAAAGGAATTCTGGAAGTGGTAGTAGAAAGAGTAAGGAGGTGTATAAGCTGGACGACTTTGTTTTGGGTGACATAGTTTGGGCAAAATGCGGGAAGCGCTACCCTGCTTGGCCTGCTCTCGTTATTGATCCTCTCTTACAAGCTCCCAAATCCGTTCTCAGTTGCTGCGTTCCCGGCGCAATTTGCGTCATGTTCTTTGGCTATTCCAAAAACGGAAAGCAGCGTGATTATGCGTGGGCGAAGCAGGGAATGGTATTCCCCTTCTTGGATTTCATGGATAGATTCCAGGGGCAGGCTCAGCTGTACAAGAGCAAGATAAGCGAGTTTCAATTGGCTATGGAGGAGGCTATGTTGGCAGAAGATGGCATTCTTGACACGCAATTGAGACCCGAGCAATTTGGTGACATTGAAGTTAATCCCGGCGAGTATATGGAAGGTGCAGGTTCCCATGCTGAGCAGGACCATTACCACCAAGGCCAGGATGCGATATCTTGTGCTGGCTGTGGTTTGATGTTGGGGGCTAAACCCAAGAAGAAGACAAAGGATTCATCTCTACCTTATTGTAAACATTGTGATAAGTTACAAAAGTCGAAACAATATTGCGGCATTTGCAAGAAGATTTGGCACCACTCGGATGGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAATGTGATAAAATTTCCAGCAAACTTCTCAAGGATTTGGAAAATATGGATTACTATTGCCCAGACTGCAAGGGAAAGTTCAATTGTAAATTAACAGCACCGCAAATATACAAGTCAAAAATAAAATCAACAGAGAATAGTAAAAGCCCTGCAATACCTGAAGAGCTAGAGGTGGTATGCAATGACATGAAAGGAATTTACCTTCCAAAGCTTCATTTGGTTATGTGCAAGTGCAGCTCTTGCGGTACAAGAAAGCATAAGCTCCCTGAATGGGAACGACATACAGGTTGCAAAGCCAGAAAATGGAAGCATACTGTAAAAGTGGAAAGCACAATGCTACCGCTAATAAAATGGATCACCAAGCACAATTCACGAGCTGGAACTCGCTTGGATCAGCAGCAGTTGATTTCATTCTTGCAAGAGAAGTACGAGCCAGTTTATGCAAAATGGACTACCGAAAGATGTGCCATTTGTAGATGGGTTGAAGACTGGGATGACAACAAAATTATTATCTGTAACAGGTGTCAAATTGCTGTCCACCAAGAGTGCTATGGGGCAAAGAATGTTAAGGATTTTACTTCTTGGGTTTGTAGAGTCTGTGAGACTCCTGACATTGAGAGAGATTGTTGCCTCTGTCCAGTAAAAGGTGGTGCTCTTAAGCCGACGGACGTGGACTTGTTGTGGGTTCACGTAACATGTGCTTGGTTTCAGCAGGAAGTTCTGTTCAGAGACCATGAGGCAATGGAACCAGCCGTTGGAATCCTTAAAATTCCCCCTGAATCTTTTCACAAGACTTGCGTGATATGTAAACAAAGGCATGGTTCATGTACAAGTTGTTGCAAGTGTGCTACATATTTTCACGTTATGTGTGCGTCGAGAATGGGATATAGCATGGAATTGCATTCTGTTGAGAAGAATGGGAAACAAAAAACACAGAAGCTAATTTATTGTAAATTTCACAGGGTGCCAAAACCAGAGGCAGTACTAGTTGTACATACAGCGGATGGAGTATTCTCTCAAAATAAGGAGGGGTGCTTTAAGGGATCAAGGCTCGTTTCATCACCCAACAATGTGGAACTCCTTGTTGATTCCTCCAAATCTCATATTAATGAGGTTGAGCCACTGTCTGCCGCCAGGTGTCGTGTCTACATAAGGTCTTCTAAGAAGAGCGATGCTGTCCCAGTAATGCACTTGCTTGGGGGGCCAAACCTCCATTCTTTAGATGCTATAGCTAAACTGGCCAGAAACGAGGATGCTGAATCATTTTCTTCTCTCAAAGAACGTCTTCACCATTTACAGAAAACCGAAAGCAGTAGAGTTTGCTTAGGAAAATCGGGTGTCCATGGATGGGGCCTCTTTGCTCGAAGAGAATTACAAGAAGGAGAAATGGTTGTTGAGTACCGTGGTGAGCATGTAAGGCGCAGTGTTGCTGATCTGAGGGAAGCTAGGTATCGTTTAGAAGGCAAAGACTGTTATCTGTTCAAGATTAGTGAGGACGTGGTAATCGACGCAACTGATAAGGGCAATATTGCACGTTTGATAAACCATTCTTGCAACCCGAACTGCTATGCAAGGATAATGAGTCTGAACGATCAAGAGAGTAGGATTGTTCTTATTGCCAAGACAGATGTTTCTGCTGGGGAAGAATTAACGTATGATTACTTGTTCGATCCAGACGACAAGGACGAACTCAAAGTTCCCTGCCGATGTGGAGCCCCCAATTGTAGGAAGTTTATGAACTAG 2853 0.443 MIIKRSLKTQIHTLKPCNNQTQSKKRKLNQLYTQPNPTPPLIPRQLTFPPVSKSPHLNHDPLRSPRRRTRILPSRFSDSILDTWTHAHEETRIPFLKQKINNTAESESEWAATALNGSDYDNCLNSVKTVKTSVNGVRSTLVKRNSGSGSRKSKEVYKLDDFVLGDIVWAKCGKRYPAWPALVIDPLLQAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWAKQGMVFPFLDFMDRFQGQAQLYKSKISEFQLAMEEAMLAEDGILDTQLRPEQFGDIEVNPGEYMEGAGSHAEQDHYHQGQDAISCAGCGLMLGAKPKKKTKDSSLPYCKHCDKLQKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLLKDLENMDYYCPDCKGKFNCKLTAPQIYKSKIKSTENSKSPAIPEELEVVCNDMKGIYLPKLHLVMCKCSSCGTRKHKLPEWERHTGCKARKWKHTVKVESTMLPLIKWITKHNSRAGTRLDQQQLISFLQEKYEPVYAKWTTERCAICRWVEDWDDNKIIICNRCQIAVHQECYGAKNVKDFTSWVCRVCETPDIERDCCLCPVKGGALKPTDVDLLWVHVTCAWFQQEVLFRDHEAMEPAVGILKIPPESFHKTCVICKQRHGSCTSCCKCATYFHVMCASRMGYSMELHSVEKNGKQKTQKLIYCKFHRVPKPEAVLVVHTADGVFSQNKEGCFKGSRLVSSPNNVELLVDSSKSHINEVEPLSAARCRVYIRSSKKSDAVPVMHLLGGPNLHSLDAIAKLARNEDAESFSSLKERLHHLQKTESSRVCLGKSGVHGWGLFARRELQEGEMVVEYRGEHVRRSVADLREARYRLEGKDCYLFKISEDVVIDATDKGNIARLINHSCNPNCYARIMSLNDQESRIVLIAKTDVSAGEELTYDYLFDPDDKDELKVPCRCGAPNCRKFMN 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181259g00025 950 SMART set_7 808 931 IPR001214 GO:0005515
Stsc181259g00025 950 SUPERFAMILY FYVE/PHD zinc finger 523 587 IPR011011 -
Stsc181259g00025 950 Gene3D - 158 264 - -
Stsc181259g00025 950 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 574 692 IPR013083 -
Stsc181259g00025 950 SMART PostSET_3 934 950 IPR003616 -
Stsc181259g00025 950 CDD PHD_ATX3_4_5_like 524 570 IPR042011 -
Stsc181259g00025 950 ProSitePatterns Zinc finger PHD-type signature. 525 570 IPR019786 -
Stsc181259g00025 950 SUPERFAMILY Tudor/PWWP/MBT 161 296 - -
Stsc181259g00025 950 Gene3D SET domain 790 950 IPR046341 -
Stsc181259g00025 950 FunFam Histone-lysine N-methyltransferase 574 693 - -
Stsc181259g00025 950 ProSiteProfiles PWWP domain profile. 164 233 IPR000313 -
Stsc181259g00025 950 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 329 398 IPR013083 -
Stsc181259g00025 950 CDD PWWP_AtATX3-like 163 264 - -
Stsc181259g00025 950 PANTHER PHD FINGER PROTEINS 65 927 - -
Stsc181259g00025 950 Pfam PHD-finger 342 395 IPR019787 -
Stsc181259g00025 950 CDD SET_SETD1-like 797 946 - -
Stsc181259g00025 950 ProSiteProfiles SET domain profile. 808 925 IPR001214 GO:0005515
Stsc181259g00025 950 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 516 573 IPR013083 -
Stsc181259g00025 950 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 950 IPR025780 -
Stsc181259g00025 950 FunFam Histone-lysine N-methyltransferase 783 950 - -
Stsc181259g00025 950 ProSiteProfiles Zinc finger PHD-type profile. 340 396 IPR019787 -
Stsc181259g00025 950 Pfam PHD-finger 537 571 - -
Stsc181259g00025 950 SUPERFAMILY FYVE/PHD zinc finger 339 403 IPR011011 -
Stsc181259g00025 950 SMART PWWP_4 162 231 IPR000313 -
Stsc181259g00025 950 SMART PHD_3 635 691 IPR001965 -
Stsc181259g00025 950 SMART PHD_3 342 394 IPR001965 -
Stsc181259g00025 950 SMART PHD_3 524 571 IPR001965 -
Stsc181259g00025 950 Pfam PHD-zinc-finger like domain 578 690 - -
Stsc181259g00025 950 Pfam PWWP domain 165 261 IPR000313 -
Stsc181259g00025 950 ProSiteProfiles Zinc finger PHD-type profile. 522 573 IPR019787 -
Stsc181259g00025 950 Pfam SET domain 819 924 IPR001214 GO:0005515
Stsc181259g00025 950 SUPERFAMILY SET domain 802 947 IPR046341 -
Stsc181259g00025 950 ProSiteProfiles Post-SET domain profile. 934 950 IPR003616 -
Stsc181259g00025 950 ProSiteProfiles Extended PHD (ePHD) domain profile. 576 691 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181259g00025 Stsc-Chr181259 121574 126981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181259g00025 525 677 C2H2 Transcription Factor Family AT3G14740 35.625 6.77e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc181259g00025 zf-HC5HC2H_2 3.9e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181259g00025 - - gmx:100785063 1278.08